Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01924 ATGCGTGGTATCAGCTATTTGAATAATAAGTACTCATCACCATCTCCATTCCAATCTCATTCGTATGATGATAATAACATGCCGCCATCATCATCTGTAATTAGCAGAATAAGTCCACTCATTCTGTTAGTTATAATAGTCTTAGCAGTTATCTTCTTCGCTTATGGCCTTGTCCATTTGATTCTATGGTTCTTCATCAAAATCCTATCATCATCGTCGTCGTCGTTCTTGTCGCCGTCTACTCTCTACAACTCTAACAGATTCCAAGAATCATCGAGGCGCTCCCGCGCGATTCAGAGACAGCTTCACCATCTCTTCCGAATGCACGATTCCGGACTAGAACAATCCACCATTGATGCTCTCCCAGTGTTCTACTACCAAGAATTGTTGGGGATGAAAGAACCATTCGATTGTGCAGTGTGCCTCTGCGAATTCTCTGCGAATGAGAAGCTGAGGTTGGTTCCAATTTGCAGCCACGCATTTCACATGAACTGCCTCGACACATGGCTTCTCTCAAACTCTACATGTCCTCTCTGTAGAGCAAATCTCTCTAGCTCTATCGTGAATCAGAATCCAGTGTTGCTTCGTGTTGTTGAGGAAGAGAATAAGAATGGTGGTGAAGGGAGTGAAGAGGAAGACGAAGGTGGTGGTGGGAGGAAAAGGGTGTTTTGTGTAAGACTTGGGAAACTGAGGAACAGTGAATTGATTCAGAGAGAAGAGGGTAGTAGTAGTAGTAGTCGTATAGGGTTGGATGGGAGAAGATGCTACTCAATGGGTTCATATGAGTATGTGGTTAGAGAATCGAATCTGAAAGTGGAAGTGGTGTTATCATCTCAGTCTCTTCATGTTGGTGGTGAAGAACAAGAAGAAGAAAATGATGATGGAAAGAAGATAGGGAAGAAGAGAACCAGAGCCGTTCCGACGCATCATAATACCATTATTCCCCCTAACGTCGTTCAACCGCTGTCCGTGCACATCGCCGACATGGCCACAGTTCAAGGATGGGCAGACACGAGGAGCCTCAGCCTTCATGTCATCACCGGCCGCTGGTTCCTGGTGTTCGCCTCCTTCTTAATCATGGTAGCCGCCAGAGCCACCTACATGTTCGGCCTCTACTCCAGCGAAATCAAAAGCACCCTCGGATACGACCAAACCACCCTCAATCTCCTCAACTTCTTCAAGGACTTTGACAGCAACGTCGGTGTCCTCTCTGGCCTCATCAATGAGCTAACCTCACCCTGGGTGGTTCTAGCCATCGATGCAATCCTCAACCTATTCGGCTACCTCATGATTTGGCTCTCCATCACCAAAAGAGTTGTGAGACCAGCGGTCTGGCAAATGTGCTTATACATTTGCATCGGCGCTAACTCTCAGTCATTCGCGATCACAATTCTATTATACTCTGTGATTTACTATGATGATACCAAGGCTTTGATTCTCTTCATTGGTTGGCTTTCCGCCACAATCTCCGTCGTTTTTCTCTGA 1485 0.4606 MRGISYLNNKYSSPSPFQSHSYDDNNMPPSSSVISRISPLILLVIIVLAVIFFAYGLVHLILWFFIKILSSSSSSFLSPSTLYNSNRFQESSRRSRAIQRQLHHLFRMHDSGLEQSTIDALPVFYYQELLGMKEPFDCAVCLCEFSANEKLRLVPICSHAFHMNCLDTWLLSNSTCPLCRANLSSSIVNQNPVLLRVVEEENKNGGEGSEEEDEGGGGRKRVFCVRLGKLRNSELIQREEGSSSSSRIGLDGRRCYSMGSYEYVVRESNLKVEVVLSSQSLHVGGEEQEEENDDGKKIGKKRTRAVPTHHNTIIPPNVVQPLSVHIADMATVQGWADTRSLSLHVITGRWFLVFASFLIMVAARATYMFGLYSSEIKSTLGYDQTTLNLLNFFKDFDSNVGVLSGLINELTSPWVVLAIDAILNLFGYLMIWLSITKRVVRPAVWQMCLYICIGANSQSFAITILLYSVIYYDDTKALILFIGWLSATISVVFL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01924 494 Pfam Nodulin-like 349 466 IPR010658 -
Aip01g01924 494 SMART ring_2 138 179 IPR001841 -
Aip01g01924 494 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Aip01g01924 494 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 23 301 - -
Aip01g01924 494 Pfam Ring finger domain 137 180 IPR001841 -
Aip01g01924 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 188 IPR013083 -
Aip01g01924 494 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 23 301 - -
Aip01g01924 494 CDD RING-H2_PA-TM-RING 137 180 - -
Aip01g01924 494 SUPERFAMILY RING/U-box 117 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01924 Aip-Chr1 102807362 102810394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01924 339 494 Nodulin-like Gene Family AT2G39210 53.723 1.59e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01924 - - gmx:100789990 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01924 01 102807362 102810394 Aip01g01924 01 102807362 102810394 ECH