Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01919 ATGGTGGCAAGATCATGCATCAATTTGTTGGACTTGGTGCCAAGGGAAGTTTTAAATTTCCCTCAAACTCATCGAGCTCTTCGGCGAGTTATGACAGTTCCAAGAACATTTTCTGATGTAGATGGCAAAAGAAGGGATGATGATGATGATGAAGCGGAGGATTATTCAAATGCTTTCTCATCAGAATGCAACCAAAAGATAATCATAGTAGCAAATTTTCTTCCAATCAATGCTGAAAAGGACAAAAAAACCGGCAGATGGTGTTTTACTTATGATGAAGGTTCTATTTTGTGGCAGTTAAAAGATTCTATCTCTTCTGAAACCGATGTTTTTTACGTGGGATCGTTGAAGGCCGATGTAGATGCTAGCGAACAAGAGAATGTTTCTGTTGAGTTGTTGGAGGAGTTCAATTGTGTGCCTACCTTCATTCCTTCAGAACTACAGAAACAATTCTATCATGGATTCTGCAAGCAACATTTGTGGCCTATATTCCATGACATGTTGCCAATGTTTGCTGACTTTCGCAATGGCTTCGATCGATCCTTATGGCATGCTTATGTGTCTGCTAACAAGATTTTTGCAGATAAAGTCATGGAGGTCATTAATCCAGAACAGGATTATGTGTGGGTTCATGATTATCATCTTATGGTTCTTCCAACATTTCTGCGAAGGCGTTGTAATAAGATCAAGCTAGGATACTTCCTTCATAGTCCATTTCCTTCATCAGAAATCTATAGGACTTTACCTGTTAGAGATGAAATTTTGAAAGCATTACTCAATTCAGATTTAATTGGCTTTCATACATTTGATTACGCGCGCCATTTTCTTTCGTGTTGTAGTCGAATTCTTGGCTTAAAGTCTGAATCTAAAAGGGGTTACATTGAGCTTGAATACTTTGGCCGTATAATATCCATTAAAAGTTTGCCAGTGGGGATTCATGTGGGTTGGCTTCAATCTGCATTAGACCACTCTTCTTCTTTAGTCAAAGCCAGAGAAATCTACAAGAAATTTAAGGGTAAGAAACTTGTTCTTGGTGTTGATGATATGGACATATTCAAAGGTATCGGTCTAAAGCTCTTGGCAATGGAAGAACTCCTTCAGCAGTATCCGGAATTTCAGGGTGAACTTGTGCTTGTCCAGATTGTGAATCCACCAAGGAGTAACGGCAAAGATGTCGAGGAAGCGCAGAAGGAGACATATATTACTGCTAATAGGATAAACAAAAGGTTTGGTTTTGCCGGTTACCAACCTGTGATCATCATTGATCATCCTATTCCTGTGTATGAGAAGATTTCTTACTTTGCTTTGGCAGATTGTTGCATTGTGAATGCGGTAAGAGATGGTATGAATTTGATTCCATATGAGTATGTAGTGTGTAGGCAGGGGAGTTCTAAAATGGATGAAGCTCTAGAACTTGATCCTGATTCTCCACATACAAGTGCACTTGTAGTTTCCGAATTCATGGGCTGCTCGCCATCTCTTAGTAGCGCAATCCGGGTGAATCCATGGGACATCAATGGTGTAGCTGATGCAATGAATTTGGCCATCAAAATGCCAAGTGAAGAGCAACAGTTGCGACATGATAAGCACTATCGATATGTTAAGTCTCATGATTTAGCTTACTGGAGCAGAAGTTTTATGCGGCATCTAGAACACTCTTGTAAGGATCATTTTAGGAATCATTGCTGGGGAATGGGGTTTGGTCTGAGTTTTAGAGTCTTGTCCCTTTCTCCAAGTTTCAGGAAGGTTTCGAATTACAACATTGTCTCAGCATATAAAAGGACTAGTTGCAGGGCAATTTTTCTGGATTATGATGGTACAATTGTGCCTCATTCCTCCGTTGTTAAACTCCCAAGTGCTGAAGTCATAGCCATTCTAAATAACATTTGCAATGACCCTAACAACACAGTGTTTATAGTAAGTGGCAGAGGAAAAACCACATTGGGTGAATGGTTCAATCAGTGTAAGAATCTTGGTATAGCAGCTGAGCATGGTTATTTTGTGAGGCAAGTGATTTTATAA 2022 0.3966 MVARSCINLLDLVPREVLNFPQTHRALRRVMTVPRTFSDVDGKRRDDDDDEAEDYSNAFSSECNQKIIIVANFLPINAEKDKKTGRWCFTYDEGSILWQLKDSISSETDVFYVGSLKADVDASEQENVSVELLEEFNCVPTFIPSELQKQFYHGFCKQHLWPIFHDMLPMFADFRNGFDRSLWHAYVSANKIFADKVMEVINPEQDYVWVHDYHLMVLPTFLRRRCNKIKLGYFLHSPFPSSEIYRTLPVRDEILKALLNSDLIGFHTFDYARHFLSCCSRILGLKSESKRGYIELEYFGRIISIKSLPVGIHVGWLQSALDHSSSLVKAREIYKKFKGKKLVLGVDDMDIFKGIGLKLLAMEELLQQYPEFQGELVLVQIVNPPRSNGKDVEEAQKETYITANRINKRFGFAGYQPVIIIDHPIPVYEKISYFALADCCIVNAVRDGMNLIPYEYVVCRQGSSKMDEALELDPDSPHTSALVVSEFMGCSPSLSSAIRVNPWDINGVADAMNLAIKMPSEEQQLRHDKHYRYVKSHDLAYWSRSFMRHLEHSCKDHFRNHCWGMGFGLSFRVLSLSPSFRKVSNYNIVSAYKRTSCRAIFLDYDGTIVPHSSVVKLPSAEVIAILNNICNDPNNTVFIVSGRGKTTLGEWFNQCKNLGIAAEHGYFVRQVIL 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01919 673 CDD GT20_TPS 66 551 IPR001830 GO:0003824|GO:0005992
Aip01g01919 673 Gene3D Glycogen Phosphorylase B; 320 536 - -
Aip01g01919 673 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 669 IPR001830 GO:0003824|GO:0005992
Aip01g01919 673 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 66 555 - -
Aip01g01919 673 Pfam Glycosyltransferase family 20 66 551 IPR001830 GO:0003824|GO:0005992
Aip01g01919 673 Pfam Trehalose-phosphatase 601 670 IPR003337 GO:0003824|GO:0005992
Aip01g01919 673 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 669 - -
Aip01g01919 673 Gene3D Glycogen Phosphorylase B; 57 319 - -
Aip01g01919 673 Gene3D - 597 671 IPR023214 -
Aip01g01919 673 SUPERFAMILY HAD-like 598 669 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01919 Aip-Chr1 102722280 102725260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01919 1 669 Trehalose Biosynthesis Gene Families AT1G23870 64.425 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01919 K16055 - gmx:100812031 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01919 01 102722280 102725260 Aip01g01919 01 102722280 102725260 ECH
Aip01g01919 01 102722280 102725260 Aip01g01919 01 102722280 102725260 PCT