Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01913 ATGAATCATAACAATAATAATAATCTCAGTCATCAAAGGGACCGCCGTGTGCTATCACTACCGGCGGTGCACCCTTGCGAAGGGATATCTCCGGCCACCCTCATTTCCTCCCTTGTTACCCTCTCCCAGAACATATGCAACTACCAACACAGCTTCTTCGCAACACAGAGACGAAACGCAAGAGAAGCAATCCGCCAAGTCAGCATCATCCTCTTCTTCCTTCTCGAAATTCAAGAACGAAGCTTACCAATCCCTCAATCCACCGTCCTCAGCCTCTCGGAACTTCACTTCACGTTTCAGAAGATCCACTTCTTGCTGCAAGATTGCGTACTTGAAGGCGCGCGTCTCTTGCTTCTCGCCAAGTCCAACCACGTGGCCTCCCTGTTTCGATCCCTAGTTCGCGCCGTGGCGACTTCCCTCGACGTTCTTCCGCTCCACGAAATCGAGGTATCCGGCGAGGTGAGGGAGCTGGTGGAGCTGCTGGCGAAGCAAGCGAGGAAAGCAAAGATGGAGCACGAACCTAAAGACGAGCACATGAGCAAGAGTGTTCATTCAATTCTAAAACAGTTGGAAAAAGGAATCGAAGTGGATAAGAATGCATTCAAAGAGATCATCGAGTACCTAGAAATCAAGACGTGGAACGAGTCTAACAGAGAGATAAATCTTTTAGAAGAAGAAATCGCTTTAGAATGCAGTAACTGCAACGAGCGAGAGCATGAGCGAGACGCTCCTCTATTGAGTAGTTTGTTAGGGTTGATGAGCTACTGCAGGGTAGTGATCTTTGAAACACTAGAAATTAGCAATAACAGAGAGAAATCAGAAACGAGAATGAGCACGGAAATGATAACGTCCGTCAATCCAGAGGACTTTCGCTGCCCAATATCTCTGGAGATGATGACGGATCCCGTGACGGTTTCAACTGGACAAACGTACGACAGAGCTTCCATCAAGAAATGGCTGAAAGCAGGGAACACCATATGCCCTAAAACAGGGGAGAATCTCTCAAACACGGAACTCGTCCCAAACACAACCCTCAAGAGACTCATCCAACAGTTCTGCAATGATAACGGCATTTCCCTCTCAAAATCAACCAACCGTAACCGCGACTTAGCCAATACAATATTACCAGGCAGTGCGGCCAACGCTCACGCCATGCAGTTCGTCTCATGGTTCCTCACACGGATGCTCGCCTTCGGTACGGACAAACAGAAATCCAAATCCGCTTACGAGATTCGGTTACTTGCTAGGTCCAATCTGTTCAACAGAGCGTGCTTGATCCAAGTTGGAACAATTCCGCCTCTGCTTGATCTTCTGCTCTGTACGGACGAGAAATCCACACAGGAAAACGCAATTTCCGCGTTGATGAAGCTTTCTAAGCATGCCACTGGGCCCCAGCACATCATGGATTCTAACGGTCTGAAACCGATTCTAACGGTTTTAAAGAAAGGGCTCAGCCTCGAAGCGCGGCAAGTTGCGGCGGCTACTGTTTTCTACCTTTCATCAGTGAGAGAGTATAGAAAGGTGGTAGGGGAAAACCCTGAGGTGGTTCCTTCTCTGGTGGAGTTGGTGAATGAAGGAACCACGTGCGGGAAGAGGAATGCAGTGGTTGCGATTTATGGTTTGGTTCTTGTTCCAAGGAACCAGAAACGAGCAATCGAAGCGGGTGTCGTTCACGCGCTCGTTGGCGTGTTGGGATCGTCCGAGAAGGACGAGCTTGTAGCTGAATGTTTGGCGGTTTTGGCCGTTTTAGCTGAGAATGTGGAAGGAGCGAACGCGATTTTGCGCGCTTCGGCTCTGTCGTTAATTACTGGGATGCTCCAAACGGCGTCGTTGCGCTTGGGGAAAGAGCACTGTGCTTCAATTTTGCTTTCGCTTTGTGTTAACATTGGTGCTGAGGTTGTGGCGGTTTTGGCCAAGGACCCTTCGGTGATGCCTCTGCTTTACTCGCTTCTCACGGAAGGTACTTCCCACGCGGCGAAGAAAGCAAGGTTCCTCATCAAAGTTCTGCAGGATTTCAGTGAAACCAGAGCTTCGGGTTTCAAGGGTTCCTCTGTTCCGCAGGAACCATCGCTTCCTGTTTGGTGA 2085 0.494 MNHNNNNNLSHQRDRRVLSLPAVHPCEGISPATLISSLVTLSQNICNYQHSFFATQRRNAREAIRQVSIILFFLLEIQERSLPIPQSTVLSLSELHFTFQKIHFLLQDCVLEGARLLLLAKSNHVASLFRSLVRAVATSLDVLPLHEIEVSGEVRELVELLAKQARKAKMEHEPKDEHMSKSVHSILKQLEKGIEVDKNAFKEIIEYLEIKTWNESNREINLLEEEIALECSNCNEREHERDAPLLSSLLGLMSYCRVVIFETLEISNNREKSETRMSTEMITSVNPEDFRCPISLEMMTDPVTVSTGQTYDRASIKKWLKAGNTICPKTGENLSNTELVPNTTLKRLIQQFCNDNGISLSKSTNRNRDLANTILPGSAANAHAMQFVSWFLTRMLAFGTDKQKSKSAYEIRLLARSNLFNRACLIQVGTIPPLLDLLLCTDEKSTQENAISALMKLSKHATGPQHIMDSNGLKPILTVLKKGLSLEARQVAAATVFYLSSVREYRKVVGENPEVVPSLVELVNEGTTCGKRNAVVAIYGLVLVPRNQKRAIEAGVVHALVGVLGSSEKDELVAECLAVLAVLAENVEGANAILRASALSLITGMLQTASLRLGKEHCASILLSLCVNIGAEVVAVLAKDPSVMPLLYSLLTEGTSHAAKKARFLIKVLQDFSETRASGFKGSSVPQEPSLPVW 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01913 694 Pfam Armadillo/beta-catenin-like repeat 421 454 IPR000225 GO:0005515
Aip01g01913 694 PANTHER OS07G0532750 PROTEIN 12 679 - -
Aip01g01913 694 CDD RING-Ubox_PUB 290 332 IPR045210 -
Aip01g01913 694 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 360 IPR013083 -
Aip01g01913 694 ProSiteProfiles U-box domain profile. 285 359 IPR003613 GO:0004842|GO:0016567
Aip01g01913 694 PANTHER U BOX DOMAIN-CONTAINING 12 679 - -
Aip01g01913 694 Gene3D - 379 678 IPR011989 -
Aip01g01913 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 555 598 IPR000225 GO:0005515
Aip01g01913 694 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Aip01g01913 694 SMART arm_5 460 501 IPR000225 GO:0005515
Aip01g01913 694 SMART arm_5 417 459 IPR000225 GO:0005515
Aip01g01913 694 SMART arm_5 543 585 IPR000225 GO:0005515
Aip01g01913 694 SMART Ubox_2 289 352 IPR003613 GO:0004842|GO:0016567
Aip01g01913 694 Pfam U-box domain 287 356 IPR003613 GO:0004842|GO:0016567
Aip01g01913 694 SUPERFAMILY RING/U-box 285 359 - -
Aip01g01913 694 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 429 472 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01913 Aip-Chr1 102503218 102505664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01913 15 691 U-box Gene Family AT1G60190 37.209 6.26e-152 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01913 - - gmx:100787869 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01913 01 102503218 102505664 Aip01g01913 01 102503218 102505664 ECH