Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01899 ATGATTGTGAGAGTGAGAGGGATCATAGGTAGCGGCGATGGCGATGAAGAACTTGTACTGGTTGAAGGAAATGTCGAACAACGAGAGGGAGAAGAGGAATGGAGTGCTGATCTGTCACAGCTGTTCATAGGTTCGAAATTCGCTTCTGGAAGGCACAGCAGGATATACAGAGGGATATACAAGCACATCGATGTTGCCATCAAGCTTGTGAGCCAGCCTGAGGAGGATGAGGAATTGGCTGCTCAGCTTGAGAACCACTTCACTTCTGAGGTTGCGCTTCTCTTTCGCTTGCACCATCCTAATATCATTACTTTTGTAGGAGCTTGCAAGAAGCCCCCTGTATTTTGCATAATCACAGAATACTTAGCTGGTGGCTCATTGAGAAGCTTCCTTCAAAGGCAAGGACCACATTCACTCCCTCTAGAACTTGTTCTAAAGCTAGCCTTAGACATTGCCAAGGGTATGCAATACCTTCACTCTCAGGGCATACTCCACAGGGATCTCAAATCAGAGAATCTTCTCTTGGGTGAAGACATGTGTGTTAAAGTAGCAGACTTTGGGATCTCATGCTTAGAATCCCAGATTGGTAGTGCTAAAGGGTTCACTGGAACTTACCGTTGGATGGCGCCAGAAATGATCAAGGAGAAGCACCATACCAAGAAAGTAGATGTTTACAGTTTCGCCATTGTTCTTTGGGAGCTTCTAACAGGACTAACACCCTTTGAGAATATGACACCAGAACAGGCAGCATTTGCAGTGACTCACAAGAATGCAAGGCCTCCATTACCATGTGATTGTCCATGGGCATTTAGTAATCTAATAAACAAATGCTGGTCAAGCAATCCAAAAAAACGACCACACTTTGATGAGATAGTCACTATTTTGGAGAGCTACATAGAATCACTGGAAAAAGATCCTGAATTTTTCACCAATTACAAACCACGTCGTCCACAAGCGGAGAGGATTCATCTTGCTTCCCTCTCTCACCTCCGTTCCATAGCAGTGACCTCCACTGGCGGTAGCGGCGGACTACACCCCAGAGCGACGGCGACTGTTCAGACGGCAGTGACGACACATGGCTGTGCGCGACGGCAGCGGCGAGTCCCTCTCCGCGCGACGCCGTCTCCACGCCTCACTCTCTCTCGATCTCGTGCTCCCCTCTGGTCGCGATCCACGGCGGCGATGGTGGCGCTATTGGAAGACATGGAGGCAGTggcggcgagacgtgggtcgacggcaaggcgcagaaatagactcagagactga 1266 0.466 MIVRVRGIIGSGDGDEELVLVEGNVEQREGEEEWSADLSQLFIGSKFASGRHSRIYRGIYKHIDVAIKLVSQPEEDEELAAQLENHFTSEVALLFRLHHPNIITFVGACKKPPVFCIITEYLAGGSLRSFLQRQGPHSLPLELVLKLALDIAKGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQIGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFAIVLWELLTGLTPFENMTPEQAAFAVTHKNARPPLPCDCPWAFSNLINKCWSSNPKKRPHFDEIVTILESYIESLEKDPEFFTNYKPRRPQAERIHLASLSHLRSIAVTSTGGSGGLHPRATATVQTAVTTHGCARRQRRVPLRATPSPRLTLSRSRAPLWSRSTAAMVALLEDMEAVAARRGSTARRRNRLRD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01899 421 CDD STKc_MAP3K-like 48 295 - -
Aip01g01899 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 163 175 IPR008271 GO:0004672|GO:0006468
Aip01g01899 421 SUPERFAMILY Protein kinase-like (PK-like) 31 295 IPR011009 -
Aip01g01899 421 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 24 317 - -
Aip01g01899 421 Gene3D Phosphorylase Kinase; domain 1 30 122 - -
Aip01g01899 421 Gene3D Transferase(Phosphotransferase) domain 1 123 330 - -
Aip01g01899 421 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01899 421 PANTHER SERINE-THREONINE PROTEIN KINASE 24 317 - -
Aip01g01899 421 PRINTS Tyrosine kinase catalytic domain signature 119 132 IPR001245 GO:0004672|GO:0006468
Aip01g01899 421 PRINTS Tyrosine kinase catalytic domain signature 203 213 IPR001245 GO:0004672|GO:0006468
Aip01g01899 421 PRINTS Tyrosine kinase catalytic domain signature 266 288 IPR001245 GO:0004672|GO:0006468
Aip01g01899 421 PRINTS Tyrosine kinase catalytic domain signature 157 175 IPR001245 GO:0004672|GO:0006468
Aip01g01899 421 PRINTS Tyrosine kinase catalytic domain signature 222 244 IPR001245 GO:0004672|GO:0006468
Aip01g01899 421 Pfam Protein tyrosine and serine/threonine kinase 44 295 IPR001245 GO:0004672|GO:0006468
Aip01g01899 421 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01899 Aip-Chr1 100713339 100726295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01899 18 304 MAP Kinase Kinase Kinase AT1G62400 64.261 2.00e-134 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Aip01g01899 PK_Tyr_Ser-Thr 8.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01899 - - ahf:112695517 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01899 01 100713339 100726295 Aip01g01899 01 100713339 100726295 ECH
Aip01g01899 01 100713339 100726295 Aip01g01899 01 100713339 100726295 PCT