Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01897 ATGGGGCGAGGAAAGATTGCGATTCGAAGGATCGACAATTCAACAAGCCGGCAAGTAACATTTTCGAAGAGAAGGAATGGATTGCTGAAGAAAGCTAAAGAATTATCTGGCAAGGAAAGAAGCTCTCTCTTGTTTCCTCCGCCGCTGCCGGTGGCACCGCGGCAGCGCTCATTGCCACCTCTGACGACCCCGCAACAGCTCTCAGGTTCTGCGCCACCGTTCCCCACCGCCTCCTCCGCGACGCCGTCACTGCCGCCAACATTGCGTTCGGAGTACTTGGTTCCTCAAGAGTATGTTATAACATTGAGGGAATCTATGCTAAATAGATGTCCAGTTTCTTCATATGAGCAAATATGTGAAGTATTCAAGAGGGAGCTTGGAGACACACTGGAAAATATATTTGCTGAGTTTGACCCAATTCCAATAGCAAGTGCTTCCCTTGCACAAGTCCATGTTGCCCGCACACATGATGGCCAAAAAGTTGCTGTGAAGGAGAGGTTCCTTACAGAGAAGGACAATCAATTAGGTTGCAGGAGTCAAGCAAGTACCAGTACCATGAGCAACTTTGGGATTCTCCTTTCAGCCTTGCCTTACCCAGCTGAGTTAGGATCTAGTGACAGGAATTCCGACTTGGCATCAAAGGCCACAATCTCCTCCATAGTAAATTTTCACAGGAATTCCAACTTGGCATTGAATTTGTATATAGGACAATTGTTTATGCTGTTGTCTTCCTAA 735 0.4707 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSGKERSSLLFPPPLPVAPRQRSLPPLTTPQQLSGSAPPFPTASSATPSLPPTLRSEYLVPQEYVITLRESMLNRCPVSSYEQICEVFKRELGDTLENIFAEFDPIPIASASLAQVHVARTHDGQKVAVKERFLTEKDNQLGCRSQASTSTMSNFGILLSALPYPAELGSSDRNSDLASKATISSIVNFHRNSNLALNLYIGQLFMLLSS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01897 244 SMART madsneu2 1 47 IPR002100 GO:0003677|GO:0046983
Aip01g01897 244 PANTHER ABC1 FAMILY PROTEIN 91 166 - -
Aip01g01897 244 MobiDBLite consensus disorder prediction 30 83 - -
Aip01g01897 244 Pfam ABC1 atypical kinase-like domain 106 164 IPR004147 -
Aip01g01897 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 36 IPR002100 GO:0003677|GO:0046983
Aip01g01897 244 Gene3D - 13 37 IPR036879 GO:0003677|GO:0046983
Aip01g01897 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip01g01897 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip01g01897 244 ProSiteProfiles MADS-box domain profile. 1 36 IPR002100 GO:0003677|GO:0046983
Aip01g01897 244 SUPERFAMILY Protein kinase-like (PK-like) 108 164 IPR011009 -
Aip01g01897 244 SUPERFAMILY SRF-like 1 36 IPR036879 GO:0003677|GO:0046983
Aip01g01897 244 MobiDBLite consensus disorder prediction 58 83 - -
Aip01g01897 244 PANTHER BNAC04G05270D PROTEIN 91 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01897 Aip-Chr1 100536067 100538167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01897 1 36 MADS-box Gene Family AT2G14210 94.444 2.07e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip01g01897 ABC1 1.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01897 K08869 - ahf:112729182 140.969