Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01880 ATGCGTGCAACCAAAGGGCAGAAGAAATCCATGTCAAAGAAGCTGAATTTTAGTCATTTGCAATGCACATTCAATTCTATTAGCAAAAGGACTGATTCCATGCCTACCACCTTGGAAGTACAGCCAAACATTCCTTCGCAACAGCCAGAAAATAAAAAAAGAAAGGAGATATTGACTGTGCCTACTGCTGAGAAAGTCAAGAATGGAGTGCAGGGTGAAAAATCAACACAAGGCTTGAAGAAGTCTAAGCCTACAAACATAGAGGCAGATGAACTTACAAGGAAGCTCGAAGTAATTCATAAAAGGAACAGCAGCATGCCAACAAGTGTAAGCCAAGACCGGAGTTATCCAAGTTCTACTCAACTAATAATCAACCAAGGGCAGCAGCAGAATATTCAACTCATAGATGAAGAGACTCAAACAGGGCAAGATGACACAACTTTGCCTACTCCTGAAACTACCCCACAAAATGAAAGTGCAATGTTGGAGCAAGGAATATCAACAAAGGGACCAAGCACTAAACTAAGTGAGGACAGGGAAGAAAGCATGGCACTTGATAAAGACTATTATCAACATGTGATGGAGGACATTGATGATGAAGAAGACAGTGGAGAAAAGTGGGTAATGCAAGCGATTCGAGATGCTTGGAAGCGGTTCAAAGGAAAGATTAAGCAGAAGCACTTCGTTCCCTATGATACTATTGAAGATACGGTGAAGAATCGACCCCCACAAGTACCAGAAAGTGGATTCATAAAATTGATCTATTATTGTTGTCATCCTCTAATCCAGGAAGACTTCCAACACCGCCAAGCTACTGGTGAAACAGAAGAGGGGAAAGAACAACCAGGTCGGGCAAGGTTGTATGGAAGATCTGTGACAAAAAGTGATTTAAAAAAACATGCTGAAATTAATGAAATCAAGAATCAGCACAAAGAGGAGGTGTCTGGTCTGAAGAATAAACTTGGACACATGGAGGCCAAACAACAAAAACAAGAGGAAGAGATTCATGGGTTGCGAAATATGGTCAAGTTAATGCTGCAGCGATCGGAACCTGGAATAAGGCCAGAAGAACTAGAAGCTTTATTACAAGATGCCCAAAAGTCTCCGATTGATGCGAATAGCGGCCATGGATCAACTCATTTTCTGAACTTGGATGTGTGTGGGACCGACGAATACGCAGACTTGGGCCCCACCAAGTTCACCCGTACGTTCATGGCTCTTATGGACACGGTTTCAGTTAAGATCAAAGAGCAAGGCTGGAGCGCTGAATCGATTATCAACCCAGTTGCCCCGATTTTCGCACTAGCGGAATGCCGCAACGACCTCAACAATAGCAATTGCTACAAATGCTTCAACCACGCCAGGGAATATTTGTCGCAGTGCTTGCCAAAGGTAGCGGGGAGAGTTTACATGGACGGTTGCTTCCTTCGCTACGATAACTATGGTTTCTTCAACGAGGTATTAGACAAGAAGTACGACCATAGTGTTTGCATAAAGTCTTCCTGGATGGAGAAGATGGAGCGCGGGCGATCGGAGTATAATAGCACCGATAGTAATAATAGCAATGCAACGGACCCCGCTGGGTTCAGGGAAAAGGTTGGGAAGGCGGTAACGAACGTGACGGAGACGGCAGCCACGTCTGTTCACAAATTCGCAGTGAATGGGGATAACAAGGACGTGTTTGCGCTGGCGCAGTGTTGGCACACATTGGAGAGAGAAGGGTGTGAGAGGTGCTTGAAAAGAGCAGAGAGGAAATTGAGTGAGTGCATTATTGTTAATGATGAAGGTAAGAGCATGCTTGCCGGTTGTTTCTTGAAGTATTCCACTCGCAAATTCTACGGTGAAGAATTCGATGAGAACGGAGTCAAGAACAACTACGACAATTCTTATAACAAGGTGATCATTGTATCTCTATCATCAGCGGTTGCTGTGACTTTGATTATTATCACAGGTGTGATGGTTAAGAAAAAGAAAGCACCAATTTGTACAGTAGGAATGGACCGTAGCAAGAGATTTGAGTACGTGGCTGGTTACACTTTTAAATATGAGTTGCTTGAAAAGGCGACCAATTATTTTGATCCTGCATACAAACTAGGGCAGGGTGGAGCTGGTTCTGTATTCAAAGGAACGCTACCTCAAGGAAAGACTGTGGCCGTGAAACGACTGTTTTTCACGACGCGACAGTGGACCGATGGGTTCTTCAATGAGGTTAATTCAATAACAGGGATTACCCACAAGAATGTGGTGAAACTTTTAGGGTGCAGTATTGAAGGCCCGGAAAGCCTCTTGGTTTATGAATTTGTGCCAAATGGGAGTCTTGAGCAAATACTTTTTGGTAAAGACTCAACAACTTTTTTGACCTGGAAGCAACGTTTTAATATCATATGTGGTGTAGCTGAGGCCCTAGCATACCTTCATGGAGGTACTGAATCAAAGATTATTCACAGAGACATTAAGTCCGGGAACATTCTACTTGATGAGAATCTTGATCCGAAAATTGCTGATTTTGGTCTTGCTCGCTTTGTTACGGAAAATAGAAGTCATGTTACCACAGGAATTGCTGGAACATTGGGATATATGGCTCCTGAATATCTTCTTCAAGGACAACTAACAGAAAAAGCAGATGTCTATGCTTTTGGTGTGGTTGTTGCTGAAATTGTATGTGGCAAGAAAAACAGTGTTTATACCCAGGGCTCAACTTCAGTACTCCATTGTATTTGGAAGAATTACAAGGCACAGAACATCACGGCATCAGTTGATCCTGCACTGAATGGTCAATTTGTAGAAGAAGAGGCATCAAATGCCCTCAGAGCTGCCCTTCTTTGCACACAGTCCTCTGTTTCTCTTAGACCATCCATGTCTCAAGTGCTTCAGATCCTAACCGATAAAGACTTTGTTGTTCCCTCCCCAAGGCAACGGCCATTCCTAAATTGCACTATGCTGAGCCTAGATGACCGAACACAAGCTACCTCCACCTTCACCCTCACCCCTGAAACTTCACCAAATGGCCCCGCCACCACTAGTGCAAGATCCTCTTTCCATACCACCACAGATTCATTTAGATCAAATACACATGCAATTAATATTGCAGTACCTTCTGATCCAAGGGAGAATAATAATAAAAATAATAATAATAATAATAAATAA 3147 0.4309 MRATKGQKKSMSKKLNFSHLQCTFNSISKRTDSMPTTLEVQPNIPSQQPENKKRKEILTVPTAEKVKNGVQGEKSTQGLKKSKPTNIEADELTRKLEVIHKRNSSMPTSVSQDRSYPSSTQLIINQGQQQNIQLIDEETQTGQDDTTLPTPETTPQNESAMLEQGISTKGPSTKLSEDREESMALDKDYYQHVMEDIDDEEDSGEKWVMQAIRDAWKRFKGKIKQKHFVPYDTIEDTVKNRPPQVPESGFIKLIYYCCHPLIQEDFQHRQATGETEEGKEQPGRARLYGRSVTKSDLKKHAEINEIKNQHKEEVSGLKNKLGHMEAKQQKQEEEIHGLRNMVKLMLQRSEPGIRPEELEALLQDAQKSPIDANSGHGSTHFLNLDVCGTDEYADLGPTKFTRTFMALMDTVSVKIKEQGWSAESIINPVAPIFALAECRNDLNNSNCYKCFNHAREYLSQCLPKVAGRVYMDGCFLRYDNYGFFNEVLDKKYDHSVCIKSSWMEKMERGRSEYNSTDSNNSNATDPAGFREKVGKAVTNVTETAATSVHKFAVNGDNKDVFALAQCWHTLEREGCERCLKRAERKLSECIIVNDEGKSMLAGCFLKYSTRKFYGEEFDENGVKNNYDNSYNKVIIVSLSSAVAVTLIIITGVMVKKKKAPICTVGMDRSKRFEYVAGYTFKYELLEKATNYFDPAYKLGQGGAGSVFKGTLPQGKTVAVKRLFFTTRQWTDGFFNEVNSITGITHKNVVKLLGCSIEGPESLLVYEFVPNGSLEQILFGKDSTTFLTWKQRFNIICGVAEALAYLHGGTESKIIHRDIKSGNILLDENLDPKIADFGLARFVTENRSHVTTGIAGTLGYMAPEYLLQGQLTEKADVYAFGVVVAEIVCGKKNSVYTQGSTSVLHCIWKNYKAQNITASVDPALNGQFVEEEASNALRAALLCTQSSVSLRPSMSQVLQILTDKDFVVPSPRQRPFLNCTMLSLDDRTQATSTFTLTPETSPNGPATTSARSSFHTTTDSFRSNTHAINIAVPSDPRENNNKNNNNNNK 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01880 1048 ProSiteProfiles Gnk2-homologous domain profile. 380 483 IPR002902 -
Aip01g01880 1048 ProSitePatterns Serine/Threonine protein kinases active-site signature. 813 825 IPR008271 GO:0004672|GO:0006468
Aip01g01880 1048 Gene3D - 381 483 IPR038408 -
Aip01g01880 1048 Gene3D - 510 612 IPR038408 -
Aip01g01880 1048 Gene3D Transferase(Phosphotransferase) domain 1 768 967 - -
Aip01g01880 1048 Pfam Salt stress response/antifungal 521 609 IPR002902 -
Aip01g01880 1048 Pfam Salt stress response/antifungal 397 481 IPR002902 -
Aip01g01880 1048 MobiDBLite consensus disorder prediction 140 178 - -
Aip01g01880 1048 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 387 1027 - -
Aip01g01880 1048 Pfam Protein kinase domain 696 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01880 1048 MobiDBLite consensus disorder prediction 33 92 - -
Aip01g01880 1048 CDD STKc_IRAK 698 961 - -
Aip01g01880 1048 SUPERFAMILY Protein kinase-like (PK-like) 678 989 IPR011009 -
Aip01g01880 1048 SMART serkin_6 692 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01880 1048 ProSiteProfiles Protein kinase domain profile. 692 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01880 1048 Gene3D Phosphorylase Kinase; domain 1 658 767 - -
Aip01g01880 1048 MobiDBLite consensus disorder prediction 69 83 - -
Aip01g01880 1048 ProSiteProfiles Gnk2-homologous domain profile. 511 612 IPR002902 -
Aip01g01880 1048 Coils Coil 300 334 - -
Aip01g01880 1048 MobiDBLite consensus disorder prediction 33 48 - -
Aip01g01880 1048 MobiDBLite consensus disorder prediction 993 1023 - -
Aip01g01880 1048 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 387 1027 - -
Aip01g01880 1048 MobiDBLite consensus disorder prediction 140 172 - -
Aip01g01880 1048 MobiDBLite consensus disorder prediction 1029 1048 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01880 Aip-Chr1 96940569 96949378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01880 398 992 Receptor kinase-like Gene Family AT1G70520 38.689 1.04e-130 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip01g01880 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01880 - - ahf:112722338 1304.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip03g04101 03 124747585 124749737 Aip01g01880 01 96940569 96949378 ECH
Aip01g01880 01 96940569 96949378 Aip01g01880 01 96940569 96949378 ECH