Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01878 ATGTATGGCACAACCATATTGGCAGATGAAATGGGCCTGGGCAAAACTGTTCAGGCCATTACATATTTAACTTTGTTGAATCACTTGCATAATGATCCTGGTCCACATCTCATGGTATGTCCTGCTTTTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCGTCAGTTTCTACTCTTCAATACCATGGGGCTGGACGAACAGCATATTGCAAGGAGTTGAACTCCCTCTCGAAGGCAGGGTTGCCTCCTCCATTTAATGTTCTTCTTGTGTGTTATTCACTTTTTGAACGGCACAGTCCACAGCAGAAAGATGATCGTAAAATATTGAAGCGCTGGAGGTGGAGCTGCATGCTGATGGATGAAGCTCATGCTTTGAAGGATTGA 393 0.4427 MYGTTILADEMGLGKTVQAITYLTLLNHLHNDPGPHLMVCPAFVLENWERELKKWCPSVSTLQYHGAGRTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWRWSCMLMDEAHALKD 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01878 130 CDD DEXHc_Snf 6 129 - -
Aip01g01878 130 Pfam SNF2-related domain 5 129 IPR000330 GO:0005524|GO:0140658
Aip01g01878 130 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 5 130 - -
Aip01g01878 130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 129 IPR027417 -
Aip01g01878 130 PANTHER SNF2/RAD54 HELICASE FAMILY 5 130 - -
Aip01g01878 130 Gene3D - 2 130 IPR038718 -
Aip01g01878 130 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 130 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01878 Aip-Chr1 96595647 96596209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01878 6 130 RAD5 or RAD16-like Gene Family AT3G16600 28.302 8.56e-11 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip01g01878 SNF2_N 1.2e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01878 K14439 - aip:110271674 280.411