Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01876 ATGTATCCGTCGGATAGCGATTTTTTTGGATCAGACTCCGATGTTGGGTTCCCTAGAGGAGACGATCTAGACTTTTTAGACGACGATTCAGAGGCTGATGAAGATAGACCTCAAGATAAGAGAATAGCAGAGCTGTCACGAGAAGATATCATGCAACTTCAGTTTACAGATGAGGAAGCTGTCTATCGATTCTACAAGACATATGCAATGATTCACGGTTTCGCTGTGAGGTTGGATGAAGTCAAACGCGATAGCGACGGTTCCGTAATTATGCGCCAAATTGTTTGCAATCGGGCAGGCTCAAGAAAGGAAATGGTTAAAAAGGATGAAAGAATCAGGGACCACCGACCCCTAACTCGAAGTTGTTGCCCGGCTAGAATTCGTGCAAGACTAGATACAAAAATTCAGCAATGGAAGGTTGTTTCGTTCTACGAAGAGCACTCTCATGAATTAGTTGCTCCACTCGATGTTAGCATGATGCCTGAGTATCGCACATTCAGTGTCTCGGATAAAGCTCAGGCAAAGAATTTGCACGACATAGGCATTAGGACCTGTCACATCTTGGGATACTTGGCTGCTCAAAAAGGTGGATATGCAAACTTGCCATTCAACCAAAAAGACATGTACAACCTCATTACTCAATATAGGAAGGAAAAGGTGAAGGGTGGTGATGCAAATGCTGCAATAAGCTATCTGAGAGGTAAAGCTGGGAACGATTCTTATTTCTTTGGCAAGTACACATTAAGTAATGAGAATCGATTGGAAAATTTGTTCTGGGCTGATAGGACTAGCCGCATTGATTATGAGTGCTTTGGGGATGTATTGACATTTGATTCGACTTACAATAGGAATGTCTACAATAAACCACTTGTTATATTTTCTGGTAGCAATCATCATGGGCAGACCGTCGTATTTGGTTGTGGTCTTCTTCTTAATGAGGATATTAGTTCATACAAGTGGCTCTTGGAAACTTTTTTGGAAGCAATGGGGAGTAAACACCCTACGGCAGTTGTCACCGACGGGGATCTTTCAATGAGAGAAGCAATTAAGCAGGTCTTTCCTTCTGCAACACATCGACTATGTGCATGGCACTTACATAGGAATGCATGCGAGAAGGTTAAGAACAGTGGATTTCTAAGGGACTTCAAGCAATTGATTTATGCCAATGTGAGTGTTGAAGAGTTTGAGGTCAGGTGGGAAGACATGGTGGCCAGGTATAACTTATCAAGCAACTCTTGGGTCATCCAAACATATGAGATGAGGAATCTATGGGCTCTTGCATATCTGAGGGACCAATTTTTTGGGCGAATCAGGACAACATCCCAGTGTGAAGGGATTAACTCTCTAATTAAAGCATATGTGAGAAAGAAAGATACCCTTCTTGAATTCATCAATAACATGGAGACCGTGGTTAGCCATTACAGGAACAATGAAAGAGTCGCAGAGTTCAATAGTAAATATACCGCTCCAGTACTTGTGACTTCTTTGCCGACACTTGAAGATTTTGCTGCAAAGACTTTCACTCGTAAAATGTTCCGAGAGGTCAGGAAGGAAATTGAGGGTGCTTGTGCAATGAATACAGAGGTGGTAATTCAGGATGGTGAAAAACTATACTTCAAGTGTAACGTTTTTGGAGTGCCAGAGATTCATCATGTGGTTGAGTTTGACAGAGTTCAGGGGATTCTCCGTTGCGAGTGTAAGTGGTTCGAAAATAGAGGAATTCCCTGCATGCATATATTCGCCTGCCTAAAACACCAACACGTTGAAGTTATTCCAGAAAGCTTAGTGTGCAAGCGTTGGACGAAGAATGCCAAAAGTGACTTCATGAAGTCAAACGTCGATGATCCAAGTGATTCTGATAAGGTACTAAAGTGTCGTTTGGGTGTGCTGGGTGCTGAGTGTTCTAGGTTGATGGATTTGGCCTGTAAGAATTCAAGTGACTTTGTGGAAGCAATGAATAGTGTTGTCGACACCATTACAAAACTCCAAAAGCGAGGTGAAAATCCACGTAACGCTAACTTAGACGATGACTGCGTTGGTGACCCATTGGTGGTGAAGAGTAAGGGAGCTCCCAAGAAAAACTCAAAATTCAAGCAACAGAGAAAATGTTCAAATTGCGGTGTGACAGGGCACTACAACAAAAGTTGTCCCAATGCTCCAAACTGA 2166 0.4252 MYPSDSDFFGSDSDVGFPRGDDLDFLDDDSEADEDRPQDKRIAELSREDIMQLQFTDEEAVYRFYKTYAMIHGFAVRLDEVKRDSDGSVIMRQIVCNRAGSRKEMVKKDERIRDHRPLTRSCCPARIRARLDTKIQQWKVVSFYEEHSHELVAPLDVSMMPEYRTFSVSDKAQAKNLHDIGIRTCHILGYLAAQKGGYANLPFNQKDMYNLITQYRKEKVKGGDANAAISYLRGKAGNDSYFFGKYTLSNENRLENLFWADRTSRIDYECFGDVLTFDSTYNRNVYNKPLVIFSGSNHHGQTVVFGCGLLLNEDISSYKWLLETFLEAMGSKHPTAVVTDGDLSMREAIKQVFPSATHRLCAWHLHRNACEKVKNSGFLRDFKQLIYANVSVEEFEVRWEDMVARYNLSSNSWVIQTYEMRNLWALAYLRDQFFGRIRTTSQCEGINSLIKAYVRKKDTLLEFINNMETVVSHYRNNERVAEFNSKYTAPVLVTSLPTLEDFAAKTFTRKMFREVRKEIEGACAMNTEVVIQDGEKLYFKCNVFGVPEIHHVVEFDRVQGILRCECKWFENRGIPCMHIFACLKHQHVEVIPESLVCKRWTKNAKSDFMKSNVDDPSDSDKVLKCRLGVLGAECSRLMDLACKNSSDFVEAMNSVVDTITKLQKRGENPRNANLDDDCVGDPLVVKSKGAPKKNSKFKQQRKCSNCGVTGHYNKSCPNAPN 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01876 721 SUPERFAMILY Retrovirus zinc finger-like domains 689 720 IPR036875 GO:0003676|GO:0008270
Aip01g01876 721 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 48 699 IPR031052 GO:0006355
Aip01g01876 721 Pfam MULE transposase domain 274 368 IPR018289 -
Aip01g01876 721 PANTHER OS02G0262500 PROTEIN 48 699 - -
Aip01g01876 721 MobiDBLite consensus disorder prediction 1 38 - -
Aip01g01876 721 ProSiteProfiles Zinc finger SWIM-type profile. 549 587 IPR007527 GO:0008270
Aip01g01876 721 Pfam FAR1 DNA-binding domain 63 152 IPR004330 -
Aip01g01876 721 ProSiteProfiles Zinc finger CCHC-type profile. 701 718 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01876 Aip-Chr1 96582649 96584814 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip01g01876 MULE 4.8e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01876 - - aip:107620373 1281.16