LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g01842	ATGGTTACACTGCTGAATACATCCTCCAAAGAAAATGAAACACTTTTGGCTGTTGGCACTGCTTATGTGCAAGGAGGAGAAGTGGCTTCTAGAGGACGTATCCTGCTGTTCTCTTTAGGAAAAAACACCGATAATCCTCAAACTCTGGTTTCAGAGGTGTACTCAAAGGAATTAAAAGGAGCTATATCTGCCTTGGCCTCTCTTCAGGGCCATCTCTTGATAGCATCTGAATCTATTGATGGAAAACATGTAGCATCAGTAACTGCAATATCTAGAGAATCTGAAAGCACAATGGGAGTTAATGACAAGATTGAAGATTCTGGAGAAAGATTTTTCAGTTCTGAGAATTCATCTCTGCTAGTTGAAGCAGTTGATGTGAATTCAACATCTGATGGAGAAGAGCAAGAGAAATGTTGTGAAGAGTTGTCAAATTTGCAGGCACGCCAGAATGAACAAGGAGACTCATTGGATGGAATAGTTGACGATACTGGGAGCAAGTCCGCAAGCAGCGTTTGCCTCATCTGGTTGCCTCCAAAAAAAGTTCAGGAGAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGCAAAGCTGGTGCTCTTGGTGATTCTGTCACTGTCTCCCGTGAGAAGAACAAGAGAGGATTAAGATTGACGAAGAGCTTCTTCAGGAAGTGGTTAATATGGGATTTGACAGAAATCAATTGGTTGAATCTTTATGCAACAGGATCTAAAATGAGGTCTGTGCCCTTCATTCTCTCCTTTCGTGTCTTCTTGATTGTCTCTTATTATTATCTATACATTTCTGGTACTGTGGCAAATTACTTGTTATTGGATAACTGGTGCCATGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAAGAGACTATGGTTGACTCTTTACCTTAG	903	0.412	MVTLLNTSSKENETLLAVGTAYVQGGEVASRGRILLFSLGKNTDNPQTLVSEVYSKELKGAISALASLQGHLLIASESIDGKHVASVTAISRESESTMGVNDKIEDSGERFFSSENSSLLVEAVDVNSTSDGEEQEKCCEELSNLQARQNEQGDSLDGIVDDTGSKSASSVCLIWLPPKKVQEKFLQERIKVGGKAGALGDSVTVSREKNKRGLRLTKSFFRKWLIWDLTEINWLNLYATGSKMRSVPFILSFRVFLIVSYYYLYISGTVANYLLLDNWCHVSSGYLGAEFQETMVDSLP	300

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g01842	300	Gene3D	-	178	282	IPR038526	-
	Aip01g01842	300	Pfam	Ribosomal L22e protein family	182	216	IPR002671	GO:0003735\|GO:0005840\|GO:0006412
	Aip01g01842	300	Gene3D	-	1	79	IPR015943	GO:0005515
	Aip01g01842	300	Pfam	CPSF A subunit region	6	76	IPR004871	GO:0003676\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g01842	Aip-Chr1	92570399	92572937	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g01842	183	211	Cytoplasmic Ribosomal Protein Gene Family	AT3G05560	89.655	1.74e-10	56.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g01842	K14401		-	adu:107467891	181.03