Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01838 ATGAAGGAGAGGCAACAGTCATATGACTCTGCTTTAACAGTGGTTAAGAAAAACTGGGAACAGAAACTTCGTAGAAGCACACTCAATTCTGCAGGGTTCAACAAGCAAAGATATCACAAATTTTCTTGTACAAGAACCAATAACGGTACTTTCAGTTCATCTCATCAAAGAAAACCTACTATTCTACATCACAAACAGAGAATCAAGAAGAAGATGGCATCATCAAGCTCGTACAATTCACCTTGCGCTGCCTGCAAATTCTTGAGGAGGAAGTGCATGCCAGGGTGTATCTTTGCGCCTTATTTTCCACCCGAAGAGCCTCAAAAGTTTGCAAACGTGCACAAGATCTTCGGGGCAAGCAACGTTACCAAGCTCCTCAACGAGCTTCTGCCTCACCAGAGGGAGGATGCGGTCAACTCCCTCGCTTACGAGGCAGAAGCTCGCGTTAGAGATCCTGTTTACGGCTGCGTTGGCGCCATATCTTTCCTCCAAAGACAAGTGCAAAGACTTCAGAAGGAACTTGATGCCGCCAACGCTGATCTTCTCCGCTATTCCTTTACTGACATCGCTCCGACACCGGCTCTTTCTATGCCCCCCGGACTAACCAATGCTACTTCCCTTCAACAAATTCCCCAAAGGTTTGGGGCAAGATTTGATAACGAAGGAAGTGGATTCTATAACAATAATCGCCAATATTCACCTAATATTTATTCTTACCCATACTCTCTTCCATGGACCGATACCTCTTCCAAGGATATCAGCGATGGGGGCGGGTTAGGTGACGGCGATGGAAGAGGAGGTAATTTGTGA 810 0.4605 MKERQQSYDSALTVVKKNWEQKLRRSTLNSAGFNKQRYHKFSCTRTNNGTFSSSHQRKPTILHHKQRIKKKMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSFTDIAPTPALSMPPGLTNATSLQQIPQRFGARFDNEGSGFYNNNRQYSPNIYSYPYSLPWTDTSSKDISDGGGLGDGDGRGGNL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01838 269 ProSiteProfiles LOB domain profile. 80 181 IPR004883 -
Aip01g01838 269 Coils Coil 160 180 - -
Aip01g01838 269 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 72 257 - -
Aip01g01838 269 PANTHER ELONGATED PETIOLULE 1 72 257 - -
Aip01g01838 269 Pfam Lateral organ boundaries (LOB) domain 81 178 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01838 Aip-Chr1 91849582 91856923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01838 72 190 AS2 family AT5G63090 90.833 2.54e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip01g01838 LOB 6.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01838 - - ahf:112722314 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01838 01 91849582 91856923 Aip01g01838 01 91849582 91856923 ECH
Aip01g01838 01 91849582 91856923 Aip01g01838 01 91849582 91856923 PCT