Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01827 ATGGTTAGAAAAAAGGCAGAGGATGCAGGCCCATCTGCAAAGACTAAGGCAAGTAGCAAAGATGCCCCTAAGAAAGAAAAAATTTCCATATCTGCCATGCTGGCCAGCATGGATGAAAAGCCTGATAAACCCAAAAAGCCCTCTTCCACTAAGCCCAAGGTAAAAGCCGCTCCAAAACCTTCTGCATATACTGATGGTATTGATCTTCCTCCATCTGACGAAGATGAAGATGAAGCTATCTTGGAGGAGGAGGAGGAAGAGAATGCCTCCAAACGGCATCAGAGGAGTGAGTTGAAGACACTTGAAGTATCAACCACAGACAAAGAGCTGAAGAAGCGTGAGAAGAAAGATATTTTAGCGGCTCATGCTGTTGAGCAGGCAAAGAAGGAAGCTCTTAAGGATGACCACGATGCTTTCACGGTGGTCATTGGAAGTCGGACTTCAGTGCTTAATGGAGATGATGATGCCGATGCTAATGTCAAAGATATAACAATAGAAAATTTCTCGGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCGTCAGTGAAGATATCTCATGGGAAGAGGTATGGTTTGGTTGGACCCAATGGAAAGGGGAAGTCCACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATTGATGTCCTTCTGGTTGAACAGGAGGTAGTTGGTGATGATAAAACAGCACTTGAAGCTGTTGTTTCAGCTAATGAAGAACTGGTTAAAGTTCGACAAGAAGTTGCTTCTTTGCAAAATGCAACTTCTTCGGAAGGAAGTGTTGACAAAGATAATAATGATGAGGAAGATGATGCAGGAGAGAAGCTAGCAGAGCTGTACGAGAAACTACAGCTGATGGGTTCTGATGCTGCTGAAGCTCAAGCATCAAAGATTTTAGCAGGTTTGGGTTTCACGAAGGATATGCAGGGCCGGCCAACAAAATCTTTTAGTGGTGGATGGAGAATGAGGATTTCTTTAGCTCGAGCACTTTTTGTGCAGCCAACTTTATTATTGCTTGATGAACCCACAAATCACCTTGACTTGAGGGCTGTTCTCTGGTTGGAAGAGTACCTGTGCCGTTGGAAGAAGACTTTGGTTGTTGTCTCACACGATAGGGATTTCCTCAATACAGTTTGCACTGAGATTATTCATCTTCATGACTTGAAACTCCATTTCTATCGTGGAAACTTTGATGACTTTGAGAGTGGGTATGAACAGCGTCGTAAAGAGATGAACAAGAAGTATGAGATTTATGACAAGCAACTGAAAGCTGCAAAAAGGAGTGGTAACCGAGCTCAGCAAGAAAAGGTGAAGGACCGAGCGAAGTTTGTGGCAGCCAAAGAAGCATCTAAAGCCAAGGGCAAAGGCAAGGGCAAGGTTGATGAAGATGAGGCCCCACCAGAGGTTCCACAGAAGTGGAGGGACTACAGTGTCGAGTTTCACTTTCCTGAACCTACCGAGCTCACACCTCCACTTCTTCAGCTTATTGAAGTGAGCTTCAGTTATCCGAACCGTGAGGATTTCAGACTGTCAAATGTTGATGTTGGCATTGATATGGGAACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTACTGAACCTTCTGGCTGGTGATTTGGTTCCAACTGAGGGTGAAGTTAGGAGGAGTCAGAAGTTGCGGATAGGAAGATACTCGCAACACTTTGTAGACCTTCTAACTATGGACGAAACCCCGGTTCAGTATCTTCTTCGTCTCCATCCTGATCAGGAGGGACTTAGCAAGCAAGAGGCTGTCCGCGCAAAACTCGGAAAGTTTGGGCTACCTAGTCATAACCATCTCACCCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTAGGGTGGTCTTCACCTCAATATCGATGTCAAGACCCCATATTTTGTTGTTGGATGAACCCACTAATCATCTGGACATGCAAAGTATTGATGCATTGGCCGATGCACTAGACGAGTTCACTGGTGGAGTTGTTCTTGTTAGTCATGACTCGAGATTGATATCGCGTGTATGTGAGGATGAAGAGAGGAGTCAAATCTGGGTTGTCGAGGATGGTACTGTCAGGACTTCGGTTGGAACATTTGACGATTACAAAACCGAGTTGATGAAAGAAATCAAAGCTGAAGTTGATGATTGA 2178 0.4477 MVRKKAEDAGPSAKTKASSKDAPKKEKISISAMLASMDEKPDKPKKPSSTKPKVKAAPKPSAYTDGIDLPPSDEDEDEAILEEEEEENASKRHQRSELKTLEVSTTDKELKKREKKDILAAHAVEQAKKEALKDDHDAFTVVIGSRTSVLNGDDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANEELVKVRQEVASLQNATSSEGSVDKDNNDEEDDAGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRAQQEKVKDRAKFVAAKEASKAKGKGKGKVDEDEAPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEVRRSQKLRIGRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSRPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVRTSVGTFDDYKTELMKEIKAEVDD 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01827 725 MobiDBLite consensus disorder prediction 85 109 - -
Aip01g01827 725 ProSitePatterns ABC transporters family signature. 321 335 IPR017871 GO:0005524
Aip01g01827 725 Gene3D - 160 445 IPR027417 -
Aip01g01827 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 707 IPR027417 -
Aip01g01827 725 Coils Coil 81 101 - -
Aip01g01827 725 CDD ABCF_EF-3 163 394 - -
Aip01g01827 725 MobiDBLite consensus disorder prediction 258 277 - -
Aip01g01827 725 CDD ABCF_EF-3 498 700 - -
Aip01g01827 725 Coils Coil 239 259 - -
Aip01g01827 725 PANTHER - 5 725 - -
Aip01g01827 725 MobiDBLite consensus disorder prediction 69 84 - -
Aip01g01827 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 498 723 IPR003439 GO:0005524
Aip01g01827 725 MobiDBLite consensus disorder prediction 1 109 - -
Aip01g01827 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 419 IPR027417 -
Aip01g01827 725 MobiDBLite consensus disorder prediction 452 473 - -
Aip01g01827 725 SMART AAA_5 187 393 IPR003593 -
Aip01g01827 725 SMART AAA_5 524 700 IPR003593 -
Aip01g01827 725 Coils Coil 413 433 - -
Aip01g01827 725 Gene3D - 464 725 IPR027417 -
Aip01g01827 725 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 725 - -
Aip01g01827 725 Pfam ABC transporter 515 650 IPR003439 GO:0005524
Aip01g01827 725 Pfam ABC transporter 178 349 IPR003439 GO:0005524
Aip01g01827 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 163 424 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01827 Aip-Chr1 89557713 89561269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01827 497 710 Calmodulin-binding Proteins AT2G36910 29.167 1.03e-14 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01827 K06184 - gmx:100806226 1200.27