Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01820 ATGAAGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCCACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCAAAAAACTGCTCAGCAACAGTTGGACAAGTGGGGAATGTTGGGGTAAACTAG 276 0.442 MKEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVN 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01820 91 PANTHER - 13 91 - -
Aip01g01820 91 Pfam Ribosomal Proteins L2, C-terminal domain 24 89 IPR022669 GO:0003735|GO:0005840|GO:0006412
Aip01g01820 91 SMART Ribosomal_L2_C_2 24 91 IPR022669 GO:0003735|GO:0005840|GO:0006412
Aip01g01820 91 SUPERFAMILY Translation proteins SH3-like domain 24 90 IPR008991 -
Aip01g01820 91 Gene3D - 13 87 IPR014722 -
Aip01g01820 91 PANTHER RIBOSOMAL PROTEIN L2 13 91 IPR002171 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01820 Aip-Chr1 88265851 88266126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01820 25 85 Cytoplasmic Ribosomal Protein Gene Family AT3G51190 42.857 1.62e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01820 K02886 - csin:114298497 174.481