Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01808 ATGCGAACGGGACAGAACGTTCACGCTTGGATCGATTTCGACGGCGAGACTATGCAGATCAACGTCACCGTCGCTCCGGCGGGCCTTCCCCGCCCGATGAAGCCAACTCTCTCGTACACAGACCCGGAAATGGCGAACTACTTGTCTTCTGATATGTTCGTTGGGTTCTCTGCTTCGAAAACCAATTGGATCGAGGAACAGAGAGTACTCGCATGGAGTTTCAGCACTTTAGGTTCCGCAAGAGACATAAACACAACTAATTTACCAGCTTTCCAGCCTACAACCTCCTCTTCCTCTCTCTCCGGCGGCGCAATCGCCGGAATCGTTCTCGGCTGCGTCGCTTTCGTGGCAATCTTGGTCTCGATCTGTTACCTGTGGTGGCGAAAGAAGATGAAGGAGCAAGAAGAAGAGATCGAGGATTGGGAACTGGAGTACTGGCCCCACAGATTCTCCTACGACGAACTCAGAACCGCAACGGGAGAATTCAGGAGGGAGAATCTTCTAGGCTCCGGCGGGTTTGGAAGAGTATACAGAGGAATGCTTCAGAACAAAACAGAGGTTGCGGTGAAATGCGTCAACCACGACTCAAAGCAAGGCGTGAGGGAATTCATGGCGGAAATTTCAAGCATGGGGAGACTGCAGCACAAGAACTTGGTCCAAATGAGAGGGTGGTGCAGAAAAGGAAACGAGCTTATGCTGGTTTATGACTTCATGCCCAACGGGAGCCTCAACAAGTGGGTGTTTGACAACCCGCCGAAGCTTCTAGAATGGGGGAGGAGGCGAAGGGTGCTCGTCGACGTGGCGGAGGGGCTCAACTACCTTCATCACGGGTGGGACCAGGTTGTTATTCACAGGGATATTAAGTCTAGTAATATCTTGCTAGACTCTGAAATGAGGGGGAGGCTTGGGGACTTTGGTTTGGCGAAGCTATACCAGCAGGGGGAGGTTCCCAACACCACGCGTGTCGTTGGCACATTGGGGTACCTCGCGACAGAGTTGGCTACCGTGGCGGTGCCAACTTCGGCAAGTGATGTTTATAGTTTTGGAGTGGTGCTTTTGGAGGTGGCATGTGGGAGGAGGCCCATTGAGACGTCGGCGGCGGAGGAGGAGGTGGTGCTAATTGACTGGGTGAGGGAGCTGTACGCCCGGGGGAGGATGTGTGACGCTGCGGACCCGAGGATTGAAGGGGAGTATGAGGTTGGGGACATGGAGATGGTGCTCAAGCTTGGGTTGGCTTGTTGCCACCCTGAGCCTCAGAGGAGGCCAACGATGAAGGAGGTGGTTGCAGTGCTTGTGGGGGACAATGTTGCGGAGGAGCCGGGGAAAGTGTTGTCTGATTTGGTGCGTGGCGACGGTGGTGGTCCGGAGAAAGAGGAGGAGACCACGGCTTTACAGGGAAACCTTCCGGATTGA 1413 0.5442 MRTGQNVHAWIDFDGETMQINVTVAPAGLPRPMKPTLSYTDPEMANYLSSDMFVGFSASKTNWIEEQRVLAWSFSTLGSARDINTTNLPAFQPTTSSSSLSGGAIAGIVLGCVAFVAILVSICYLWWRKKMKEQEEEIEDWELEYWPHRFSYDELRTATGEFRRENLLGSGGFGRVYRGMLQNKTEVAVKCVNHDSKQGVREFMAEISSMGRLQHKNLVQMRGWCRKGNELMLVYDFMPNGSLNKWVFDNPPKLLEWGRRRRVLVDVAEGLNYLHHGWDQVVIHRDIKSSNILLDSEMRGRLGDFGLAKLYQQGEVPNTTRVVGTLGYLATELATVAVPTSASDVYSFGVVLLEVACGRRPIETSAAEEEVVLIDWVRELYARGRMCDAADPRIEGEYEVGDMEMVLKLGLACCHPEPQRRPTMKEVVAVLVGDNVAEEPGKVLSDLVRGDGGGPEKEEETTALQGNLPD 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01808 470 SMART serkin_6 162 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01808 470 ProSiteProfiles Protein kinase domain profile. 162 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01808 470 Coils Coil 124 144 - -
Aip01g01808 470 Gene3D Phosphorylase Kinase; domain 1 147 237 - -
Aip01g01808 470 CDD STKc_IRAK 168 431 - -
Aip01g01808 470 MobiDBLite consensus disorder prediction 442 470 - -
Aip01g01808 470 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 1 462 - -
Aip01g01808 470 Gene3D - 1 109 - -
Aip01g01808 470 PANTHER - 1 462 - -
Aip01g01808 470 Pfam Legume lectin domain 2 88 IPR001220 GO:0030246
Aip01g01808 470 SUPERFAMILY Protein kinase-like (PK-like) 138 431 IPR011009 -
Aip01g01808 470 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Aip01g01808 470 Gene3D Transferase(Phosphotransferase) domain 1 238 440 - -
Aip01g01808 470 Pfam Protein kinase domain 163 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01808 470 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 227 IPR013320 -
Aip01g01808 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 282 294 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01808 Aip-Chr1 85062784 85065270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01808 1 433 Receptor kinase-like Gene Family AT1G15530 69.195 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Aip01g01808 Pkinase 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01808 - - gmx:100780660 734.176