Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01803 atggGCCTCCCTCGGCGCTCACTCTCTATCACAAACCCTCCGTCGACGCTCACTCTCTCTCCATGGTTCAGCACCCGCCGCGTTGCCGTCTCCCTCTCTGAAGTCGTTGCGCCGCCGTCTCCATCTCCGTCACTCGTCGCACCTCCGTCTGCCACGTTCAGCGTTCGCAGCACCGTGGCTAAAAGATATCAATTATTTCTTCAGGAGTTGACAGCATTGGTTGGAGTAAGCGGGGCTGGAAAAACCACGCTAATGGATGTCTTGGCTGGAAGAAAAACTGGAGGTGTTGTGAAGGTTCTTCTACAGCTAGATCTGTTTCTCAATGAACTCACCATCATGTTCGAGCGCAACACCGAGACGGGCTCTGTTTGGGTTACACTTAAACGATCATCCTTGAAGTCTAAAGCTGTGAGGAATAAAATGGCCGCAGCTGGTGAAGTGATTGACTATAAATGCCTTATTCTTTTCACCAATGGGAAGAAGACAATTTCTACATCAATACAAAGCTGGTTTGAGGATAGGCTCCAAGACTTACCAGATGACCCTAATAATGAATTGATGATTCCCGAAGACCCTGAATGTAATAAGGAAGAAAATGTGAAAGACACCTTGAAGGAGTTAGTCATGCTTCCTCTACAGACAATGCTTGCGAAAGAGACAAAAGGAGAAAAGATTGAAGATGGGGTTGGGAGTTCCTACTCTTCCATTTACCTTTGTAGCTCACCTTCTAGCAGTGGCTGCTATTGTCATGCTATCATAACTTACAAAGCTCTACCCATGAAGAAGGAAATTAAGAAGTTGATACATCTTATTCTCCACGGAATTGCACTGATACTTGGAATAGTTGGAATTTGTGCTGCCTTCAAGAATCATAATGAAAGTGGCATCGCCAATATGTACAGCTTGCATGCATGGCTTGGCATTGGAGTTATTTCCCTTTATGGGATTCAGTGGATATTTGGGTTTGTGATGTTTTTCTATCCTGGAGGGAGTGAATCACCAAGAAGTCAATCAATCCCATGGCACGTGTTGTTTGGGCTGATAGTGTATGTTCTGGCACTTGGGACAGCTTCCCTTGGGTTCTTAGAGAAGCTCACATTCCTGGAGAGTTCAGCAGGTGTGGCTAAATATGGTTCAGAGGCACTCATTGTTAACTTCACTGCCATTGTCACCAGGGAATACTACTCTTTGGCCCCCTTGGTACTGGAAAGACAATGCTTGCGAAGGCTGTCTATGTTGCTGCAATCCGGAATAGAAGACTTACCCTTCCTGAAGATCCTTCATAGAGATATTTACAGCCTTAAGTATGGGCTGAACATTCTACAGGGCATTGAAGGTGAAAACAAGAATTCAAAGAAATTGCTGAAGATCCATCCTGTTCTTATGCTAATTGGATTAATAATCATGGGAGGTGAAGCTAACATAACTTACAAAGCTCTACCCCTGAAGAAGGAAATTAAGAAGTTGATACATCTTATTCTCCACGGAATTGCACTGATACTTGGAATAGTTGGAATTTGTGCTGCCTTCAAGAATCATAATGAAAGTGGCATCGCCAATATGTACAGCTTGCATTCATGGCTTGGCATTGGAGTTATTTCCCTTTATGCGATTCAGGGAATACTGCTCTTTGGCCCCCTTGGTACTGGAAAGACAATGCTTGTAGAGGCTGTAGCAACCGAGGCTGGAGCCAACTTTATTAACATTTCAATTACTTCAATAACAGGTGTGGCTAAATATGGTTCAGAGGAACTCCTTGTTAACTTCACTGCCATTGTCACCAGGGAATACTGCTCTTTGGCCCCCTTGGTACTGGAAAGACAATGCTTGTAG 1833 0.4424 MGLPRRSLSITNPPSTLTLSPWFSTRRVAVSLSEVVAPPSPSPSLVAPPSATFSVRSTVAKRYQLFLQELTALVGVSGAGKTTLMDVLAGRKTGGVVKVLLQLDLFLNELTIMFERNTETGSVWVTLKRSSLKSKAVRNKMAAAGEVIDYKCLILFTNGKKTISTSIQSWFEDRLQDLPDDPNNELMIPEDPECNKEENVKDTLKELVMLPLQTMLAKETKGEKIEDGVGSSYSSIYLCSSPSSSGCYCHAIITYKALPMKKEIKKLIHLILHGIALILGIVGICAAFKNHNESGIANMYSLHAWLGIGVISLYGIQWIFGFVMFFYPGGSESPRSQSIPWHVLFGLIVYVLALGTASLGFLEKLTFLESSAGVAKYGSEALIVNFTAIVTREYYSLAPLVLERQCLRRLSMLLQSGIEDLPFLKILHRDIYSLKYGLNILQGIEGENKNSKKLLKIHPVLMLIGLIIMGGEANITYKALPLKKEIKKLIHLILHGIALILGIVGICAAFKNHNESGIANMYSLHSWLGIGVISLYAIQGILLFGPLGTGKTMLVEAVATEAGANFINISITSITGVAKYGSEELLVNFTAIVTREYCSLAPLVLERQCL 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01803 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 96 IPR027417 -
Aip01g01803 610 ProSiteProfiles Cytochrome b561 domain profile. 421 610 IPR006593 -
Aip01g01803 610 Gene3D Signal recognition particle alu RNA binding heterodimer, srp9/1 99 181 IPR009018 GO:0006614|GO:0008312|GO:0048500
Aip01g01803 610 Pfam ATPase family associated with various cellular activities (AAA) 541 576 IPR003959 GO:0005524|GO:0016887
Aip01g01803 610 CDD Cyt_b561_ACYB-1_like 251 369 - -
Aip01g01803 610 CDD AAA 530 589 - -
Aip01g01803 610 ProSiteProfiles Cytochrome b561 domain profile. 200 403 IPR006593 -
Aip01g01803 610 PANTHER TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 1 436 543 - -
Aip01g01803 610 PANTHER TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 1 250 394 - -
Aip01g01803 610 Pfam Eukaryotic cytochrome b561 457 542 IPR006593 -
Aip01g01803 610 Pfam Eukaryotic cytochrome b561 247 367 IPR006593 -
Aip01g01803 610 Gene3D - 432 608 - -
Aip01g01803 610 Gene3D - 232 404 - -
Aip01g01803 610 Pfam Signal recognition particle 14kD protein 102 169 IPR003210 GO:0005786|GO:0006614|GO:0008312|GO:0030942
Aip01g01803 610 SUPERFAMILY Signal recognition particle alu RNA binding heterodimer, SRP9/14 99 169 IPR009018 GO:0006614|GO:0008312|GO:0048500
Aip01g01803 610 SMART 561_7 245 361 IPR006593 -
Aip01g01803 610 SMART 561_7 457 577 IPR006593 -
Aip01g01803 610 PANTHER CYTOCHROME B561-RELATED 436 543 IPR043205 GO:0016491
Aip01g01803 610 PANTHER CYTOCHROME B561-RELATED 250 394 IPR043205 GO:0016491
Aip01g01803 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 584 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01803 Aip-Chr1 84319932 84326674 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01803 431 594 Chloroplast and Mitochondria Gene Families AT4G25570 50.000 4.12e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01803 K08360 - csin:114266683 202.986