Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01802 ATGCCGCCTCCTGTTGTAGGTCGTGGTGCTTCGGTCCCCTACGGTGCCCCTCCGGTCCCTTATGGTGCAGGAAGAGGAGCTCCGAATGCCTTCGGGTCCTCGTCGGTAACTTCCTTTACGCCCCCTCCTGGTGGTTTCAATATAGGCCGAGGCGGTGGTGGACTTGGTAATGGCCATGCTGGTGGCAGAAAAGACGGCGGAGGTCGTTACGGTGCTGGTGGAAGAGGTCGCGGAGGTTCTGGTAGAGACGGCGGAACTGGTAGAGGCGGTGGAAGCGGTTTTAGGGGAGGCAGAAGTCATGGTGGTGGAAGAGGAGGAGGAGGTGGTAGACATGGTGGACGGTCATCGAAGGATGAATTGAACAAGATTTCCTTGCCAAAGCAGGATTTTAAGAATTTGGTCCCTTTTGAGAAGAATTTCTACGTTGAGTCCCCTGCAGTGAGGGCCATGTCCGATCAAGAAGTGATGCATTATCGTGCCAGTAGAGAAATAACAGTGCAAGGCCATGATGTGCCGAAACCCATTCGGATGTTCCATGAGGCCAGGTTTCCTGATTACTGCCTTGAGGTGATTGAAAACCTGGGATTTGTTGAGCCGACTCCAATCCAGGCCCAGGGTTGGCCGATGGCTCTTAAAGGCAGAGATTTGATTGGCATTGCGGAGACTGGCTCCGGCAAAACTTTGTCATATCTGCTTCCTGCTTTGGTGCATGTCAGTGCACAACCTGGACTGTCACATGGGGATGGTCCCATTGTCTTAGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAAGAAGCTCAGAAATTCGCAGGGCGGGCAAATATTAGAAGTACATGCATCTATGGTGGTGCACCAAAGGGACCGCAAATTCGTGACCTTCAAAGGGGTGTAGAGATTGTTATTGCTACACCAGGTCGCCTTATAGATATGCTGGAAGCTCAGCACACAAACTTGCAGAGAGTTACTTACCTTGTCTTGGATGAAGCTGATAGGATGTTGGACATGGGTTTTGAACCTCAGATAAGGAAAATTGTAGGCCAGATTCGACCAGATAGACAGACGTTATATTGGAGTGCTACATGGCCAAAGGAGGTTGAAGCTCTGGCAAGGCAGTTCCTGCGCAACGCATATAAGGTAATTATTGGGTCACCAGAACTGAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTTGTGACAGATGCAGAGAAATATAACAGATTGATTAGATTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGATGTGATCAAATTACAAGACAATTGAGGATGGATGGATGGCCAGCTCTATCCATCCATGGTGATAAAAACCAAGCTGAAAGAGACTGGGTTTTGGCTGAGTTTAAGAATGGTAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGGTCAATTTTGATTTTCCTTCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGGGCTAAAGGGACTGCGTACACCTTCTTCACGCATGCTAATGCTAAGTATGCGAGGGCTCTGATAAAGATTTTACAAGATGCAGGTCAGGTTGTGAGCCCTGCACTATCTGCATTGGCTCGGTCAGCTGGTTCTGCTCTATTAGGATCCAGAGGAAGCTTTCGATCAAGAGGACGTGGAGGCTTTGGTGGCAACAGAGGTGGAAGATCAGGATCCAATACCATTCCTCTAGGTTCAAAGAGGCCTTGGCATGGTATGTAG 1806 0.4801 MPPPVVGRGASVPYGAPPVPYGAGRGAPNAFGSSSVTSFTPPPGGFNIGRGGGGLGNGHAGGRKDGGGRYGAGGRGRGGSGRDGGTGRGGGSGFRGGRSHGGGRGGGGGRHGGRSSKDELNKISLPKQDFKNLVPFEKNFYVESPAVRAMSDQEVMHYRASREITVQGHDVPKPIRMFHEARFPDYCLEVIENLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHVSAQPGLSHGDGPIVLVLAPTRELAVQIQEEAQKFAGRANIRSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPKEVEALARQFLRNAYKVIIGSPELKANQSINQVVEVVTDAEKYNRLIRLLKEVMDGSRILIFMETKKGCDQITRQLRMDGWPALSIHGDKNQAERDWVLAEFKNGRSPIMTATDVAARGLDVKDIKCVVNFDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHANAKYARALIKILQDAGQVVSPALSALARSAGSALLGSRGSFRSRGRGGFGGNRGGRSGSNTIPLGSKRPWHGM 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01802 601 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 328 336 IPR000629 -
Aip01g01802 601 PANTHER LD32873P 56 587 - -
Aip01g01802 601 MobiDBLite consensus disorder prediction 572 601 - -
Aip01g01802 601 Pfam Helicase conserved C-terminal domain 406 516 IPR001650 -
Aip01g01802 601 SMART helicmild6 435 516 IPR001650 -
Aip01g01802 601 MobiDBLite consensus disorder prediction 1 124 - -
Aip01g01802 601 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 56 587 - -
Aip01g01802 601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 207 382 IPR014001 -
Aip01g01802 601 SMART ultradead3 195 398 IPR014001 -
Aip01g01802 601 Gene3D - 389 558 IPR027417 -
Aip01g01802 601 CDD SF2_C_DEAD 395 525 - -
Aip01g01802 601 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 176 204 IPR014014 GO:0003724
Aip01g01802 601 CDD DEADc_DDX5_DDX17 188 382 - -
Aip01g01802 601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 410 555 IPR001650 -
Aip01g01802 601 Pfam DEAD/DEAH box helicase 200 370 IPR011545 GO:0003676|GO:0005524
Aip01g01802 601 Gene3D - 149 388 IPR027417 -
Aip01g01802 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 537 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01802 Aip-Chr1 84140904 84144958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01802 173 562 Eukaryotic Initiation Factors Gene Family AT3G19760 32.908 7.64e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01802 K12823 - gmx:100777610 830.091