Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01790 ATGGGTCGCCATTCTTGCTGTGTAAAGCAGAAACTGAGGAAAGGTTTGTGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATCACATAACAAGGTTCGGTGTCGGATGCTGGAGCTCCGTTCCAAAACTAGCTGGGCTGCAAAGATGCGGAAAGAGTTGCAGATTAAGATGGATAAACTATCTGAGGCCGGATTTAAAGAGAGGGATGTTCTCTCAGCAGGAGGAGGATCTTATAATCAGTCTCCATGAAATCCTTGGAAACAGGTGGGCTCAGATAGCAGCGCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTCTGGAATTCATGTCTGAAGAAGAAGCTAGTGAAGCAAGGAATTGACCCAGCCACACACAAGCCTCTATCAACTGATGATCAAAAAGAAGAAGAGAGCTGCAGCAAGAAAATCATCACGCCGTCAGAGAATTCCAAGATACAAATTCCATTCTCAACGGCCTTGGCCTCATCGCTGAACGATTCTGGTTACTACGCCGGCGATGATAACAGCAATGCCATAACGGAAGCTTCTAGAGACATTTTCATGACGAGTAACAATAATAAGCCAACATTTTTGGACCCTCTATCTTCATTCTATGCTGATTTTCCTCATCAGCCCAATAATTACCATCACCTAGCGCCGGTAACTGCCGTAACTAACTACTGTGGAGGAGGATTCTCTTCAATGCCGAGTCTAACCAATTCAGATCAAGGGGGACACGTGTCAGTCACAGATCAATTCATGAACAGCAATAAGGAGAGTTCAAGCAATAACAGCTCATCAAACATGTACACATCAGTAACAGGGTTCTCATCATCATCACCATGGGACGCTACCGCTGAAAATATTACTAACAAGCTTGTGGAACCGTTTTTTCAGTTTAGTGCTATAAAATGTGAGGATTTATACAAGACCACTTGTTCTTCGTGGGAAGAAGATCAAGAACACACTCACACTAATACTGCTTCTTCTTCCATACATTTCACTACCTATCCGTTAACCTCACTTTCAGAAGATCTAACCGCCGCTAATTTTGATGTCTTCCACCATATATGA 1077 0.4327 MGRHSCCVKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEILGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLVKQGIDPATHKPLSTDDQKEEESCSKKIITPSENSKIQIPFSTALASSLNDSGYYAGDDNSNAITEASRDIFMTSNNNKPTFLDPLSSFYADFPHQPNNYHHLAPVTAVTNYCGGGFSSMPSLTNSDQGGHVSVTDQFMNSNKESSSNNSSSNMYTSVTGFSSSSPWDATAENITNKLVEPFFQFSAIKCEDLYKTTCSSWEEDQEHTHTNTASSSIHFTTYPLTSLSEDLTAANFDVFHHI 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01790 358 CDD SANT 70 109 IPR001005 -
Aip01g01790 358 Gene3D - 69 145 - -
Aip01g01790 358 CDD SANT 17 61 IPR001005 -
Aip01g01790 358 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Aip01g01790 358 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip01g01790 358 SMART sant 66 114 IPR001005 -
Aip01g01790 358 SMART sant 13 63 IPR001005 -
Aip01g01790 358 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip01g01790 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip01g01790 358 Gene3D - 11 67 - -
Aip01g01790 358 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip01g01790 358 PANTHER MYB TRANSCRIPTION FACTOR 1 354 - -
Aip01g01790 358 PANTHER MYB DOMAIN PROTEIN 55 1 354 - -
Aip01g01790 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip01g01790 358 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01790 Aip-Chr1 81050987 81052535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01790 1 134 MYB Transcription Factor Family AT1G57560 79.104 9.10e-80 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g01790 Myb_DNA-binding 7.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01790 K09422 - gmx:100811140 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01587 01 58270621 58272734 Aip01g01790 01 81050987 81052535 PCT