Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01786 ATGGCAATAGACTTTGATCCAAACTCCTTGCAAAATATTCTACCTAAAGCAGTCTCATCATTGGAATGGGCAATCTCAGAGGGAAAAGGAAGAGTTTATGTGCATTGTAGTACTGGAATTGGTAGAGAACCAGGGGTGACAATAGCTTATTTGTTCTGGTTCTATGACATGAATTATAATTTTGTTGATAGTACTGTTAAGGCTAGTGATGAAATGCAGGAGCAATTAGAGTTCAAGAAAGCTCAAGATAGTGTAGCTTTGCTGTCAAGGCACTACAACAAAAGTTGTCCTAATGTTCCTGGTAGAATCCCAAAGGAGCCAGTAGACGATGATACAGAAAAGAATATCAGTAGCCATCTTGACATCCTTACTAAGTGCAAAAGACATCACAGTGTGAAAAATCAGCAGAAGATGAAAAAAGGTAGGAATATTGGTGGTGGAACAACACCAACCTCAGCAGCTAAACCGACTTTTACTAATCAAGTGAAAACATCAAGTCCTGGTCCCGATATCCCTGTTTTGCATCTACAAGTTACGAAGAATCCGAGATGA 552 0.3931 MAIDFDPNSLQNILPKAVSSLEWAISEGKGRVYVHCSTGIGREPGVTIAYLFWFYDMNYNFVDSTVKASDEMQEQLEFKKAQDSVALLSRHYNKSCPNVPGRIPKEPVDDDTEKNISSHLDILTKCKRHHSVKNQQKMKKGRNIGGGTTPTSAAKPTFTNQVKTSSPGPDIPVLHLQVTKNPR 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01786 183 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 3 60 IPR029021 -
Aip01g01786 183 Pfam Rit1 DUSP-like domain 8 80 IPR033421 -
Aip01g01786 183 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 2 61 - -
Aip01g01786 183 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 11 64 IPR000387 GO:0016311|GO:0016791
Aip01g01786 183 MobiDBLite consensus disorder prediction 129 173 - -
Aip01g01786 183 Gene3D Protein tyrosine phosphatase superfamily 2 97 IPR029021 -
Aip01g01786 183 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 2 61 - -
Aip01g01786 183 MobiDBLite consensus disorder prediction 141 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01786 Aip-Chr1 80522158 80524522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01786 2 66 Protein tyrosine phosphatase (PTP) family AT3G10940 70.769 4.56e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01786 - - aip:107641230 153.295