Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01772 ATGGCTTCAATTCTTCAATATTGTAGCTTTAGTAGCTTTTTGTTGGTTACATTAACATGCATGTTCACAACCATTGGAAATGCAGCATTAGCAACGGGCATATTTAGACCTAGTGATTGGGCTCTTGCACATGCCACATTTTATGGTGATGAGTCTGCTTCTGCCACCATGGGAGGAGCTTGTGGGTATGGAAACTTGTTTTCGAACGGTTATGGAACAGACACAGCAGCATTGAGCTCAACGTTGTTCAACAATGGATATGCATGTGGGACTTGTTATCAGATAAAGTGCTACCAATCGAGTGCATGTAATGCCAATGTGCCCTACACCACTGTAACCGCCACAAATCTTTGTCCTCCTAATTGGGCCGAGCCCTCTGATAATGGCGGTTGGTGTAACCCACCAAGGGCCCATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGACTGCTGGCATTGTCCCTGTTCTCTACCGCAGAGTTGCATGCGAAAGGAGTGGGGGGCTTCGATTCGCAATGCAAGGAAATGGGTACTGGGTATTGGTGTATGTGATGAATGTGGGAGGTGGTGGAGACATAAGCAGTATGTGGGTCAAAGGAAGCACAACAGGGTGGATCGCTATGACCCACAATTGGGGTGCTTCTTACCAAGCATTTGCTTCACTCTCTTCCCAACCTCTATCCTTCAAGATTACTTCTTTAACTACCAAACAGACCATCATTGCTTGGAATGTTGCTCCTTCTAATTGGGCCGTTGGACTCGCTTATTCCACCAATATCAACTTCCATTGA 801 0.4594 MASILQYCSFSSFLLVTLTCMFTTIGNAALATGIFRPSDWALAHATFYGDESASATMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYQSSACNANVPYTTVTATNLCPPNWAEPSDNGGWCNPPRAHFDMSKPAFMKIAQWTAGIVPVLYRRVACERSGGLRFAMQGNGYWVLVYVMNVGGGGDISSMWVKGSTTGWIAMTHNWGASYQAFASLSSQPLSFKITSLTTKQTIIAWNVAPSNWAVGLAYSTNINFH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01772 266 Pfam Expansin C-terminal domain 173 250 IPR007117 -
Aip01g01772 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Aip01g01772 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Aip01g01772 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Aip01g01772 266 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Aip01g01772 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Aip01g01772 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Aip01g01772 266 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Aip01g01772 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
Aip01g01772 266 Gene3D - 172 266 IPR036749 -
Aip01g01772 266 Gene3D - 27 167 IPR036908 -
Aip01g01772 266 Pfam Lytic transglycolase 75 161 IPR009009 -
Aip01g01772 266 SUPERFAMILY Barwin-like endoglucanases 39 189 IPR036908 -
Aip01g01772 266 SMART dpbb_1 75 161 IPR007112 -
Aip01g01772 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Aip01g01772 266 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Aip01g01772 266 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Aip01g01772 266 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Aip01g01772 266 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Aip01g01772 266 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Aip01g01772 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Aip01g01772 266 PANTHER EXPANSIN-A15 2 266 IPR002963 GO:0009664
Aip01g01772 266 PANTHER EXPANSIN 2 266 - -
Aip01g01772 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01772 Aip-Chr1 78765125 78768658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01772 1 266 Expansin Gene Family AT1G12560 60.902 9.55e-118 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01772 - - gmx:100807807 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01772 01 78765125 78768658 Aip05g00948 05 13194241 13195399 PCT