Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01767 ATGATGAAGATGGTGAAGAAGTTCCACAAATTGGTCAAGTTGATGATTAAGTTGGTGATGAAGCTGATGCCTAACAAGGTACTGTTGTGGAAGGTGTTGCTGCTGCTCAAGTTGTCCAAGCAAAAGATAAATAGGCAAAACAAACTTTCAATTGTCAGGCCATCTGTTGATGCTATCAGTTCTCTAAAGTCAAATGTTAGTGCTGTTAATGTTGTTTCAAGAGAGACAatgaaaggaCTGAGATTACCAACAAAAGATTCTCATTGCTCCGGTTCCAGGCTACTTGTCAGGATGGTGAGGGGGAAGACACAGATGAAGCGCATAGAGAACGAGACAAGTAGGCAAGTAACGTTTTCAAAGAGAAGAAATGGTTTGCTTAAGAAGGCTTTTGAGCTTTCAGTTCTCTGTGATGCTGAAGTCGCACTCATCATTTTCTCTACCAGAGGCAAGCTCTATGAGTTCTCCAGCTCTAGTGTAAACAAAATAGTGGAACGCTATCAAAGGAAGGTCAAGGATCTACATAGCCTCAACACCAAACAAATCCAAGAAAATACACAGGTAAAGGAAGGTGATGACATCAACATCACAAAGAAGCTAGAGCAACTAGAAGTTTCTAAAAGAAAGCTTTTGGGAGATGGTTTGGATTCATGCCCCATTGAAGAGTTACAACAGATAGAGAATCAGCTGGAACGAAGCTTAACCAAAGTTAGGGCAAGAAAGAACCAATTGTTCAGGGAGCAAATTGAGAAGCTAAAGGAACAGGAAAAATGCCTTCTTGAAGAAAATAGAAAATTGAAAGAGAAGTGGCTTGAACAGCAACGGTCTTTAAGCAAACAAGGCGTGTTGCTTGTCGGAGAAAGGCGGCCGGCAGTGGAAGAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGAAGTGGTGGAGACAGAGTTGGAGTTGTTCATAGGGCTACCCGAGAGAAGAATGCCTTAA 966 0.4193 MMKMVKKFHKLVKLMIKLVMKLMPNKVLLWKVLLLLKLSKQKINRQNKLSIVRPSVDAISSLKSNVSAVNVVSRETMKGLRLPTKDSHCSGSRLLVRMVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSSSSVNKIVERYQRKVKDLHSLNTKQIQENTQVKEGDDINITKKLEQLEVSKRKLLGDGLDSCPIEELQQIENQLERSLTKVRARKNQLFREQIEKLKEQEKCLLEENRKLKEKWLEQQRSLSKQGVLLVGERRPAVEEEEEEEEEEEEVVETELELFIGLPERRMP 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01767 321 PANTHER MADS BOX PROTEIN 98 316 - -
Aip01g01767 321 Pfam K-box region 193 268 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip01g01767 321 SUPERFAMILY SRF-like 100 171 IPR036879 GO:0003677|GO:0046983
Aip01g01767 321 ProSiteProfiles K-box domain profile. 185 275 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip01g01767 321 SMART madsneu2 98 157 IPR002100 GO:0003677|GO:0046983
Aip01g01767 321 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 107 154 IPR002100 GO:0003677|GO:0046983
Aip01g01767 321 ProSitePatterns MADS-box domain signature. 100 154 IPR002100 GO:0003677|GO:0046983
Aip01g01767 321 PANTHER MADS-BOX PROTEIN SOC1 98 316 - -
Aip01g01767 321 ProSiteProfiles MADS-box domain profile. 98 158 IPR002100 GO:0003677|GO:0046983
Aip01g01767 321 Coils Coil 219 268 - -
Aip01g01767 321 Coils Coil 290 311 - -
Aip01g01767 321 Gene3D - 110 190 IPR036879 GO:0003677|GO:0046983
Aip01g01767 321 CDD MADS_MEF2_like 100 167 IPR033896 GO:0000977|GO:0045944
Aip01g01767 321 PRINTS MADS domain signature 135 156 IPR002100 GO:0003677|GO:0046983
Aip01g01767 321 PRINTS MADS domain signature 120 135 IPR002100 GO:0003677|GO:0046983
Aip01g01767 321 PRINTS MADS domain signature 100 120 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01767 Aip-Chr1 77401086 77412970 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01767 98 319 MADS-box Gene Family AT4G22950 58.108 1.06e-79 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip01g01767 K-box 6.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01767 - - ahf:112805426 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01767 01 77401086 77412970 Aip01g01767 01 77401086 77412970 ECH