Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01753 ATGGACGGCGCCATCCTCGTCGTCTCCGGCGCCGACGGCCCCATGCCTCAGACCAAGGAGCACATCCTCCTCGCCAAGCAGGTTGGTGTCCCCAACATGGTGGTTTTCCTCAACAAGCAGGACCAGGTGGATGATGAGGAGCTTCTTGAGCTTGTGGAGCTCGAGGTTCGTGAGCTTCTCTCCTCGTACGAGTTTCCCGGCGATGAAGTCCCCATTATCTCAGGTTCGGCCCTTCTAGCATTGGAAGCTTTGATGGCGAACCCTGCCATCAAGCGTGGTGACAACGAGTGGGTGGACAAGATTTATGCCCTCATGGATGCCGTGGATAACTACATTCCCATCCCTCAGCGCCAAACGGACCTTCCCTTCTTGCTTGCCATCGAAGATGTGTTCTCCATTACAGGTCGTGGGACTGTGGCTACCGGAAGGGTTGAGAGAGGGACTATTAAGGTTGGGGAAACTGTTGAGATTGTTGGTGTGAGGGAGACTAGGAGCACTACTGTCACTGGTGTGGAGATGTTCCAGAAGATTCTAGATGAGGCAATGGCTGGTGATAATGTGGGGTTGTTGCTTAGAGGTATTCAGAAGGTTGATATTCAAAGAGGAATGGTGTTAGCTAAGCCGGGGACTATTACCCCGCACACTAAGTTTTCTGCCATTGTGTATGTTTTGAAGAAGGAAGAAGGAGGGAGGCACTCACCATTCTTTGCTGGATACCGACCGCAGTTTTACATGAGGACCACTGATGTGACTGGGAAAGTGACGTCGATTATGAATGATAAGGATGAGGAGTCCAAGATGGTGATGCCAGGGGACAGGGTTAAGATGGTGGTGGAGCTTATAGTACCTGTGGCTTGTGAGCAAGGGATGAGGTTTGCTATTCGGGAAGGAGGGAAAACTGTGGGAGCTGGTGTCATCCAATCCATCATCGAGTGA 936 0.516 MDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDEVPIISGSALLALEALMANPAIKRGDNEWVDKIYALMDAVDNYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGETVEIVGVRETRSTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01753 311 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 210 310 IPR009001 -
Aip01g01753 311 Gene3D Translation factors 118 246 - -
Aip01g01753 311 CDD EFTU_II 123 209 IPR033720 -
Aip01g01753 311 Gene3D Translation factors 250 310 - -
Aip01g01753 311 PANTHER ELONGATION FACTOR TU-RELATED 1 311 - -
Aip01g01753 311 Pfam Elongation factor Tu GTP binding domain 1 113 IPR000795 GO:0003924|GO:0005525
Aip01g01753 311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 131 IPR027417 -
Aip01g01753 311 SUPERFAMILY Translation proteins 117 213 IPR009000 -
Aip01g01753 311 Pfam Elongation factor Tu C-terminal domain 210 309 IPR004160 -
Aip01g01753 311 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 116 IPR000795 GO:0003924|GO:0005525
Aip01g01753 311 Pfam Elongation factor Tu domain 2 137 205 IPR004161 GO:0005525
Aip01g01753 311 PANTHER ELONGATION FACTOR TU 1 311 - -
Aip01g01753 311 TIGRFAM EF-Tu: translation elongation factor Tu 1 311 IPR004541 GO:0003746|GO:0005525|GO:0006414
Aip01g01753 311 CDD EFTU_III 212 306 - -
Aip01g01753 311 Gene3D - 1 115 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01753 Aip-Chr1 75434028 75435233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01753 2 309 Eukaryotic Initiation Factors Gene Family AT5G60390 28.869 3.13e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01753 K02358 - pvy:116110375 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01753 01 75434028 75435233 Aip01g01753 01 75434028 75435233 ECH
Aip01g01753 01 75434028 75435233 Aip01g01753 01 75434028 75435233 PCT