Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01732 ATGGCGGCGATACCGTCGTCGAACCGTTCCCCCGACGACTTCACCGTCGATCAAACGCCGCTAATCGCGAACTCTAACGGCGGCGGTGGTGGAGGCACCTACGACGAATCGAACTCCGGCCGCAGATTTGTTCGGCGGCAGAGCCTCCGCCAGGCTGCGCGGTTTCTCCGGCAGGGGAGCGGGCGTAGGTCGATGCGGGAGCCGTCGATGGTGGTGAGGGAGACGGCGGCGGCGCAGCTGGAGGAGCGGCAGAGCGATTGGGCGTACTCGAAGCCGGTGGTGGTGCTCGACGTCCTCTGGAACTTCGCGTTCGTGGTGGCAGGCGCTACTGTGCTAGTCCTGAGCCGGAACGAGTCGCCGAACGTGCCGCTGAGGTTGTGGATCTTAGGCGACGTCGTTCAAGGTGTTAATGGAGTTGGCGTTGGGGGGAGTGGAGATTTAAGCTCCGGTTCCATGGAAGGTTCTGGACACTATTTGACATTGGCTCAATTCGATGAGGACGGCACAAGCATGCCAAAGCATTTGGAATCAGCCAACACAATGTTTTCCTTTATTTGGTGGGTTGTCGGGTTCTATTGGGTATCAGCTAGTGGTCAAGACTTAGCCCAAGAGGCTCCTCTGCTTTATTGGTTATGTATAGTCTTCCTGGGTTTCGATGTTTTCTTTGTCGTTTTCTGCATTGCACTGGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCGTGCATCATTGCACTTCTATATGCAGTTGCAGACCAGGCAAGGGCATCTAAAGAAGATATTGAGCAGTTGTCGAAATTCAAATTCCAAAGGAATGAAAATAATGAGAAACTCACTGATAATACACAAGAATGTTGCATCTGCCTTTCTGCATATGAGGATGGTGTTGATCTAAGACAACTTCCCTGTGGTCACCATTTTCACTGTGCTTGTGTGGACAAATGGCTATACATTAATGCTACCTGCCCCCTCTGCAAGCCTTTGGGTTGCAGTATAATAGGCACGTATGAGACTCAAATCAATGAGTGGCTGCACGCCGAATCCCAGGAAGAGCATCAAAGCTGGCAGCTACAAGGTTGA 1083 0.5226 MAAIPSSNRSPDDFTVDQTPLIANSNGGGGGGTYDESNSGRRFVRRQSLRQAARFLRQGSGRRSMREPSMVVRETAAAQLEERQSDWAYSKPVVVLDVLWNFAFVVAGATVLVLSRNESPNVPLRLWILGDVVQGVNGVGVGGSGDLSSGSMEGSGHYLTLAQFDEDGTSMPKHLESANTMFSFIWWVVGFYWVSASGQDLAQEAPLLYWLCIVFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQARASKEDIEQLSKFKFQRNENNEKLTDNTQECCICLSAYEDGVDLRQLPCGHHFHCACVDKWLYINATCPLCKPLGCSIIGTYETQINEWLHAESQEEHQSWQLQG 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01732 360 Pfam Ring finger domain 285 327 IPR001841 -
Aip01g01732 360 MobiDBLite consensus disorder prediction 1 41 - -
Aip01g01732 360 PANTHER TARGET OF ERK KINASE MPK-1 137 284 - -
Aip01g01732 360 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 137 284 - -
Aip01g01732 360 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 138 - -
Aip01g01732 360 CDD RING-H2_RNF111_like 285 327 - -
Aip01g01732 360 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 285 327 - -
Aip01g01732 360 SMART ring_2 286 326 IPR001841 -
Aip01g01732 360 MobiDBLite consensus disorder prediction 1 33 - -
Aip01g01732 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 329 IPR013083 -
Aip01g01732 360 SUPERFAMILY RING/U-box 276 332 - -
Aip01g01732 360 ProSiteProfiles Zinc finger RING-type profile. 286 327 IPR001841 -
Aip01g01732 360 PANTHER TARGET OF ERK KINASE MPK-1 5 138 - -
Aip01g01732 360 PANTHER TARGET OF ERK KINASE MPK-1 285 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01732 Aip-Chr1 71923250 71927703 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01732 45 327 C3H Transcription Factor Family AT1G68070 47.188 2.20e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01732 - - ahf:112722254 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01732 01 71923250 71927703 Aip05g00919 05 12741305 12745305 PCT