Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01708 ATGGAGATTATCGAAGGTGTCTCCGGCGCCCACTTCTCCGGTTGGCGGCCATCATCGACGGTGCCTTCTGCTCCTACTTCTCCCAGCGCTCCATCTCAACCCTTCGTTATCGGGGTCTCTGGAGGCACTGCATCGGGGAAGACCACAGTGTGTGAATTGATCATTCAACAACTGCAAGATCACAGAGTTGTTCTTGTTTGTCAGGACTCATTCTATCGTGGACTAACAAATGATGAGCTGAAACACGTTCATGAGTATAATTTTGATCATCCTGATGCATTTGATACAGAGCAACTTGTAGAAACCCTGAGCAAGCTCAAATCTGGGCAATCAGTTCAGGTTCCAGTATATGATTTCAAGCTCCATCAGAGATCTTCTGATGTTTTCCGATTGGTGAATGCTTCTGAAGTAATCATTATGGAGGGTATATTGGTTTTTCATGAGCAAAGAGTCCGAGACATGATGAATATGAAAATATTTGTTGATGCTGATCCTGATGTAAGGCTTGCCCGCAGAATAAGACGTGACACGGTTGAAAGGGGTAGAGATGTACACTCTGTACTGGAACAGTATGCAAAATTTGTTAAGCCTGCATTTGAAGATTTTATTCTTCCATCCAAGAAGTATGCTGACATTATCATACCTCGTGGGGGAGACAATGGAGTAGCGATCGACTTGATAGTTCAACATATTCGTACCAAGCTTGGCCAACATAACCTCTGCAAGATATATCCAAATTTGAATTTGATATTCTCTACTTTTCAGACTAGAGGCATGCATACTATTATTCGTGACAAGGATGTCTCAAAGCATGATTTTGTTTTTTATTCTGATCGGCTAATTCGTTTGGTAGTGGAACACGGTCTTGGTTACTTGCCATTTAAAGAGAGACATATTATCACCCCTACAGGAGCAACTTATACCGGAGTTGAGTTTTGTAGGCAATTGTGTGGGGTATCCGTCATACGAAGTGGTGAAAGCATGGAAAATGCTTTGCGTGCATGCTGTAAAGGTATAAAAATAGGAAAGATACTCATCCACCGTCAAGGTGAGGAAACCCAGCTTATCTATGAGAAGCTTCCAAAAGATATTTCAGAGAGACATGTTCTTCTGATGGATCCTGTACTTAGTACGGGTAACACCGCCAGCCAGGCAATTGAGCTTCTTATAAAAAAAGGGGTTCCAGAGTCCAATATAATATTCCTCAACCTCATCTCTGCTCCTGAGGGAATAAATTGTGTATGCACACGTTTTCCGCACCTCAAGATTATCACTTCGGAGATTGAAGAGGGACTAAATGACGAGTGCCATGTGATACCAGGTTTAGGAGAATTTGGTGACCGCTATTTTGGTACAGACGATTAG 1365 0.4249 MEIIEGVSGAHFSGWRPSSTVPSAPTSPSAPSQPFVIGVSGGTASGKTTVCELIIQQLQDHRVVLVCQDSFYRGLTNDELKHVHEYNFDHPDAFDTEQLVETLSKLKSGQSVQVPVYDFKLHQRSSDVFRLVNASEVIIMEGILVFHEQRVRDMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFEDFILPSKKYADIIIPRGGDNGVAIDLIVQHIRTKLGQHNLCKIYPNLNLIFSTFQTRGMHTIIRDKDVSKHDFVFYSDRLIRLVVEHGLGYLPFKERHIITPTGATYTGVEFCRQLCGVSVIRSGESMENALRACCKGIKIGKILIHRQGEETQLIYEKLPKDISERHVLLMDPVLSTGNTASQAIELLIKKGVPESNIIFLNLISAPEGINCVCTRFPHLKIITSEIEEGLNDECHVIPGLGEFGDRYFGTDD 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01708 454 SUPERFAMILY PRTase-like 237 453 IPR029057 -
Aip01g01708 454 TIGRFAM udk: uridine kinase 35 234 IPR000764 -
Aip01g01708 454 Pfam Phosphoribulokinase / Uridine kinase family 36 222 IPR006083 GO:0005524|GO:0016301
Aip01g01708 454 PANTHER URIDINE KINASE 18 451 - -
Aip01g01708 454 CDD UMPK 36 234 IPR000764 -
Aip01g01708 454 Pfam Uracil phosphoribosyltransferase 252 452 - -
Aip01g01708 454 ProSiteProfiles UvrC family, homology region profile. 122 218 IPR001162 GO:0009381
Aip01g01708 454 PANTHER URIDINE KINASE 18 451 - -
Aip01g01708 454 Gene3D - 31 237 IPR027417 -
Aip01g01708 454 PRINTS Uridine kinase signature 34 51 - -
Aip01g01708 454 PRINTS Uridine kinase signature 64 75 - -
Aip01g01708 454 PRINTS Uridine kinase signature 109 124 - -
Aip01g01708 454 PRINTS Uridine kinase signature 166 176 - -
Aip01g01708 454 PRINTS Uridine kinase signature 180 191 - -
Aip01g01708 454 PRINTS Uridine kinase signature 202 215 - -
Aip01g01708 454 CDD PRTases_typeI 316 411 IPR000836 -
Aip01g01708 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 227 IPR027417 -
Aip01g01708 454 Gene3D - 238 452 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01708 Aip-Chr1 69744940 69748123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01708 3 454 PRT Gene Family AT3G27190 74.207 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01708 K00876 - gmx:100816209 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01708 01 69744940 69748123 Aip01g01708 01 69744940 69748123 ECH