Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01685 ATGGCGGCAGGGCGAAAAGGTGTTGTTCTGAGAAGAGAATCTTACAGGGAGAGTTCCATCAAGGAGCTTGATCACTGTAGGAATGGTTCTGTACAGAATGGGTTTCATGTTGGAAAAGAGGAGAGAGAGGAAGGTGAGCTCTGTGTCGAGCCTGGGGTGCGTGACTATGAACCTGCCTCAGGGTTTAAAGCAGTTGATGGAGATGAGGTCTTGCCACCACCGGGAAAGAGAAGAAAATTTTCTCCGATTGTGTGGGATCTACCAGAGAAGGAAGGAGTGATCCCCTCCAAAAAAGGGGTCACACAGGTTACTACTGTGTCTCACTCCTGTCCAACTCTGTTGACAAGCCCCGTACAAGATGGTCGTTTGCATGGGGGTGTCTCTAGGATGCCTCCACAAAATTCATCTTGTGTCTTGCAGCCAGGGCATGATGACCAAGAAGCAGATGAAGAGAACAATGCCCAAGGGTGGAACATCAAAATGTCTAGATGGGCTTCTGATGGTCAATCACCGGTGGGTGCTGTTGCTGAATTTAATTTTGGCAAAGTGAAGCCAAGTCCTGAGATTGGTGAATTTCAAAGAGAATGTTCAGAAAGCACAATCACTAGATCCTCAGGAAGCAATGGACGAGATAATAGTGGGGGCCGTTTTGATGGTAGTGATTCTGAAAAGGAATTCCCTACTGACTTCATGGTCGATGATGAGGAACAGAGTGATGTTGGTGATTATGCATGTGATTCTGATGAAGATGCCGGTTTAATGCACCCGCAGAGAAATATAAACATGCTTCAGAGTTGTAGAAGTGTGTGTGAGTTTGAAATGATTAAGAAAATCAACGAAGGAACTTATGGTGTTGTCTATAAGGCTAGGGATAAGAAGACCGGAGAAATAGTAGCATTGAAGAAGGTGAAGATGAATATAGAAAGGGATGGCTTTCCATTGTCATCCTTGAGGGAAATTAACATTCTCTTGTCTTTTGATCACCCCGCCATTGTGGATGTTAAAGAAGTAGTTGTGGATAGTTATGATGGTACTTTCATGGTGATGGAGTACATGGAGCATGACCTTAAGGGACTGATGGAGGCAAAGAAGCAGCCCTTCAGTATGGGTGAAATAAAATCTTTGATGCTGCAACTTCTTGAAGGTGTCAAGTATCTCCATGACAATTGGGTTCTCCATAGGGACTTAAAGACATCAAACATTCTGCTGAGCGACAAGGGGAAGCTGAAAATATGTGACTTTGGGTTGTCCCGGCAGTTTGGAAGCCCACTGAAGCCATATACGCCTATTGTTGTGACACTATGGTACAGGGCTCCAGAGCTTTTGTTAGGAGCTAAGGAATATTCAACCGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCCGAGTTTGTTGCCAGGGAACCTCTGTTCACGGGTAGAACAGAACTTGAACAAATTGATAAGATTTTTAGGACCCTGGGTACACCTGATGAGAAGATTTGGCCGGGCTTATCTAAATTACCTGGTCCTAAAGCAAAATTTGTTAAACAACCGTACAATATGCTAAGGAAGAAATTTCCAGCCACATCTTTTACTGGTTCACCAGTTCTGTCTGAGCTAGGATTCGACTTGTTGAAGAAGCTTCTTACTTACAATCCCGAAGAGAGGATAAGTGCAGAAGAGGCCCTTCTTCATGATTGGTTCCATGAAGTCCCCCTTCCAAAATCTGATTTCAAACCAATTTTCCCTTTGCGTGGCTAG 1743 0.4435 MAAGRKGVVLRRESYRESSIKELDHCRNGSVQNGFHVGKEEREEGELCVEPGVRDYEPASGFKAVDGDEVLPPPGKRRKFSPIVWDLPEKEGVIPSKKGVTQVTTVSHSCPTLLTSPVQDGRLHGGVSRMPPQNSSCVLQPGHDDQEADEENNAQGWNIKMSRWASDGQSPVGAVAEFNFGKVKPSPEIGEFQRECSESTITRSSGSNGRDNSGGRFDGSDSEKEFPTDFMVDDEEQSDVGDYACDSDEDAGLMHPQRNINMLQSCRSVCEFEMIKKINEGTYGVVYKARDKKTGEIVALKKVKMNIERDGFPLSSLREINILLSFDHPAIVDVKEVVVDSYDGTFMVMEYMEHDLKGLMEAKKQPFSMGEIKSLMLQLLEGVKYLHDNWVLHRDLKTSNILLSDKGKLKICDFGLSRQFGSPLKPYTPIVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAEFVAREPLFTGRTELEQIDKIFRTLGTPDEKIWPGLSKLPGPKAKFVKQPYNMLRKKFPATSFTGSPVLSELGFDLLKKLLTYNPEERISAEEALLHDWFHEVPLPKSDFKPIFPLRG 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01685 580 MobiDBLite consensus disorder prediction 58 77 - -
Aip01g01685 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Aip01g01685 580 Gene3D Transferase(Phosphotransferase) domain 1 354 573 - -
Aip01g01685 580 PANTHER CELL DIVISION PROTEIN KINASE 179 577 - -
Aip01g01685 580 Pfam Protein kinase domain 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01685 580 SMART serkin_6 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01685 580 PANTHER CYCLIN-DEPENDENT KINASE 179 577 - -
Aip01g01685 580 MobiDBLite consensus disorder prediction 186 226 - -
Aip01g01685 580 MobiDBLite consensus disorder prediction 193 215 - -
Aip01g01685 580 CDD STKc_CDC2L1 266 562 IPR045267 GO:0004674|GO:0005524|GO:0006468
Aip01g01685 580 SUPERFAMILY Protein kinase-like (PK-like) 266 568 IPR011009 -
Aip01g01685 580 ProSiteProfiles Protein kinase domain profile. 272 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g01685 580 Gene3D Phosphorylase Kinase; domain 1 255 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01685 Aip-Chr1 67583741 67587057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01685 267 568 Core Cell Cycle Gene Families AT5G10270 44.969 1.06e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Aip01g01685 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01685 K08818 - gmx:100788840 758.444