Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01663 ATGGACCGTAATTCAAGAAGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGTAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCAGATGGTATTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGACTTTGTGCAGTTTGCATGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATCGGTGGCAGGACAATCAAGGACAAATTTGGGGTAAGGTCTCCGAGACATAGCTCTGCAGAAATGATGGCAGCCCTTTACCTACAAGTCAGCATTATTAGCCAGGCACTAATTTTTGTCACCAAGTCTTGCAGCTGGTCCTATGTTGAAAGACATGGTCTTCTTCTATTGGGTTCTTCATGA 591 0.4399 MDRNSRSSKGVGYIEFYDVMSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGVARRLYVGNLHFNMTETDLQMVFEAFGQVELVQLPLDESGNCKGFDFVQFACLEDARNAQSLNGQLEIGGRTIKDKFGVRSPRHSSAEMMAALYLQVSIISQALIFVTKSCSWSYVERHGLLLLGSS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01663 196 SUPERFAMILY RNA-binding domain, RBD 72 147 IPR035979 GO:0003676
Aip01g01663 196 SMART rrm1_1 73 145 IPR000504 GO:0003723
Aip01g01663 196 Gene3D - 1 54 IPR012677 -
Aip01g01663 196 Gene3D - 121 196 - -
Aip01g01663 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 149 IPR000504 GO:0003723
Aip01g01663 196 PANTHER CC1-LIKE SPLICING FACTOR 1 143 - -
Aip01g01663 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Aip01g01663 196 SUPERFAMILY RNA-binding domain, RBD 2 48 IPR035979 GO:0003676
Aip01g01663 196 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 143 - -
Aip01g01663 196 Gene3D - 68 120 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01663 Aip-Chr1 64406263 64408585 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01663 144 193 Primary Pumps ATPases AT2G18960 72.000 1.98e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01663 K13091 - ahf:112721449 382.104