Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01659 ATGTCTTCTAATTATCCAAATAGTTGCGGCTTCAAACGCGAGTTCAACAGCGATGAAATAAGCCCTATAATGGTGCAGGATCCTTCTTGCATAATCTTCTATTCCTGTCCCAACCTATCCAACTTGGATGATACTACTACTCCTTTCTCTACAGTAAAAGACCGTTTTAGCCCCGAAGAGAAAAGAATCTTGGAGAATACTTTCATCCACTGGAGCCACACTATAAGCTCTTCTTTGGATGAAATTTCACAAACCAAAAGGCTGAGAAGAACCACAAGCATCCCAATTTCTCTAGAAAATCTCTCAATAAACCCGATTTATGGCTTGAATTATAATAAAAATAGCATCCAAACGCACATCAGAGATCACATAAAAAGTTGTTCGCAGATGTACCGCGCTGCCGAGGCAGTTGAAGAGGCAGCACAAGACATGATTAATTCGGAAGGCGGCGGAGAAGATGGCTGCGATGGAATGAGGCTTGTTCAACTGCTAATCTCTTGCGCCGAGGCCGTTGCGTGTCGTGACAAATCGCACGCTTCGATACTTCTATCAGAACTCAAGTCTAGCGCCTTGGTTTTCGGCACCGCCTTCCAGCGAGTAGCGTCCTGCTACGTGCAGGGCTTGTCCGAGCGATTGTCTTTGATTCAGCCGTGTCTTGGTCCGGTGGCGGCGGCGCAACCAATGATGAACATAATGGACGCCGCGTCGGAGAAGATGGAAGAAGCGTTCAGGCTGGTGTATGAAATCTGTCCACATATTCGGTTCGGACATTTCGTGGCGAATTCCGCGATAGTGGAAGCCTTTGAGGGTGAGAGTCTTGTCCATGTGGTAGACCTCGGCATGAGCCTAGGCCTATCACATGGTCACCAATGGAGGGGCCTGATCCAATCCTTGGCCAACCGCTCCGGGGCATGTGTTCGCAGGCTCCGGATCACGGCAGTTGGTCTCTGTATTAGCAGGCTCCGGCTCATTGGTGATGAGCTCTCTGTTTACGCGAACAGCATGGGAATCAACTTTGAATTCTCCGTTGTGCAGAAGAATCTAGAGAATCTGAAACCTGAAGATGTAATAAAGGAAGATAATGAGGTTCTTGTGGTGAATAGTATCCTTCAGTTGCATTGTGTTGTTAAAGAAAGCCGTGGCGCTTTGAACTCTGTGCTTCAGATGATTCACGGGCTTTCGCCAAAGGTATTGGTTATGATTGAGCAGGATTCGAGTCATAATGGACCGTTTTTTCTTGGAAGGTTTATGGAATCTTTGCATTACTACTCTGCAATATTTGATTCGCTTGATGCAATGTTGCCAAAGTATGATACGAAGAGAGCGAAGATGGAGCAGTTTTACTTTGCTGAGGAGATAAAGAACATTGTGAGCTGTGAGGGGCCCCTTCGGATGGAGCGGCACGAGAGGGTGGACCAGTGGCGGAGGAGGATGAGCCGGGCGGGGTTCCAGGGTTCGCCGATTAAGATGGTGGCGCAGGCAAAGCAGTGGCTTGTGAAGAATAAGGTTTGTGATGGATACACTGTTGTGGAAGAGAAAGGGTGCTTGGTTCTTGGTTGGAAATCGAAGCCTATTGTTGCAGCTTCTTGTTGGAAGTGTTGA 1602 0.4763 MSSNYPNSCGFKREFNSDEISPIMVQDPSCIIFYSCPNLSNLDDTTTPFSTVKDRFSPEEKRILENTFIHWSHTISSSLDEISQTKRLRRTTSIPISLENLSINPIYGLNYNKNSIQTHIRDHIKSCSQMYRAAEAVEEAAQDMINSEGGGEDGCDGMRLVQLLISCAEAVACRDKSHASILLSELKSSALVFGTAFQRVASCYVQGLSERLSLIQPCLGPVAAAQPMMNIMDAASEKMEEAFRLVYEICPHIRFGHFVANSAIVEAFEGESLVHVVDLGMSLGLSHGHQWRGLIQSLANRSGACVRRLRITAVGLCISRLRLIGDELSVYANSMGINFEFSVVQKNLENLKPEDVIKEDNEVLVVNSILQLHCVVKESRGALNSVLQMIHGLSPKVLVMIEQDSSHNGPFFLGRFMESLHYYSAIFDSLDAMLPKYDTKRAKMEQFYFAEEIKNIVSCEGPLRMERHERVDQWRRRMSRAGFQGSPIKMVAQAKQWLVKNKVCDGYTVVEEKGCLVLGWKSKPIVAASCWKC 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01659 533 Pfam GRAS domain family 160 532 IPR005202 -
Aip01g01659 533 ProSiteProfiles GRAS family profile. 151 532 IPR005202 -
Aip01g01659 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 92 532 IPR005202 -
Aip01g01659 533 PANTHER DELLA PROTEIN RGL1-LIKE 92 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01659 Aip-Chr1 63244194 63246015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01659 157 533 GRAS Transcription Factor Family AT1G66350 37.795 2.69e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip01g01659 GRAS 1.9e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01659 - - adu:107491113 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01659 01 63244194 63246015 Aip01g01659 01 63244194 63246015 ECH