Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01642 ATGGAACACACTGAATCCGATTCTGCTTCTTCCTCACTTCCCAATGGCGGTGGTGACTCCATCACCGCCACCCAACAAGACCCTCAACTTGCTCCTTCTTCCAATCACGGCACCGACGATCCTCAGCCGTCAGATCTCTATCAAACGGCTAAGGATGGTTCACTCTCGGCTGAGCTTCAGAGTAAGCTGGATTTGAAGGGTTTGGAAGGTGTGGGCGAAGAGGGTGGCGAGATTGGGGATAAAGTTTCAAACTTTGGCCAAGTTGGTGGTGGTGTTGATGATGGGGGTGTTACTAATGGTGACGATGAAGTTGTAAATGGTTGTGATGAGGGTTTTAAAGGTGGTGGTGGTGATGGGGATAACTGGGGGTGGGAGACCAATAGTTGGGAAGAGGAGAATGTCAATGTGGGTCTTGTGGATGGTGATTATGATGGGTTAGTTAATGGATATGTTGATGCTGATGGGGGTGATGATGTTGATGGGGATGAGAAGAGGGAAGAGAAAAATGGTGGTGGTAGGGCACAACACCAGTACCCTTGGAGGCCTGATGCTCAGGATTGTGCATTTTATATGAAGACTGGGAATTGCAAATTTGGAATCAATTGCAAGTTCAATCACCCCATTAATAGGAGGAAAAACCAGGCTGTTAAAGAGTGGCCAGCAGAAAGAGAGGAAGAGCAAGCAGAGAGATCAGGACAGACAGAATGCAAGTATTATTTAAGGTCCGGGGGTTGTAAGTTTGGAAAAGATTGTAAATATAACCATACAAAAGGAAAAGATTTAACAACCGAGGAGGTGGCAGAACTCAATTTTCTTGGTCTGCCTATTCGTCTGGTATGTATATATGAAGCTTCTTTCATATACCATCTTTTATCTTTTGGAGCAAACTGCAAGTTTAATCATCCTGACCCTACAACTGTTGGAGGTTCTGAATCATCTCCAGGGTATAGTAATGGAGGATCTGATCCTTCTTCACGGTATAGTAATGGACGATCTAATACTTCTTCAGGGTATAGTAATGGAGGATCTATTTCATTACATGGTGTATCACAACAGTCTGTGTCAACATGGTCTTCTCCAAGAACAGTAAATGAAACATCTCCTTTTGTGCCAATGATGCTTTCGCCCCCAAGTCCTGATTGGAATGCATATCAGGCACCTACCTACCTATCTGAGAGGAGTATGCATCCACCTCCACCATATGTCATGAACAATCCAGTGATCGAAACAAATGTTTATATACACCCACAAAAAAGAATTCAAGTTGATGATTTTCCTGAAAGACCTGGTGAACCTGAATGCAGCTACTTCCTGAAAACTGGGGATTGCAAGTTCAAATCCAATTGTAAATTTCACCATCCAAAGAATCGGATAGCAACATTACCTCCATGCAACCTCAATGACAAAGGCCTGCCTCTTAGACCTGACAAGAATGCGTGCATGCATTACACACGATATGGACTCTGTAAGTTTGGACCGGCTTGTAAGTATGACCACCCCATAAACCCAGTGCCCCCAACTGGTGTTGAAGTTGATGGGATGGGTGGAAATGGAGGTGCTGTTCAGTAA 1569 0.443 MEHTESDSASSSLPNGGGDSITATQQDPQLAPSSNHGTDDPQPSDLYQTAKDGSLSAELQSKLDLKGLEGVGEEGGEIGDKVSNFGQVGGGVDDGGVTNGDDEVVNGCDEGFKGGGGDGDNWGWETNSWEEENVNVGLVDGDYDGLVNGYVDADGGDDVDGDEKREEKNGGGRAQHQYPWRPDAQDCAFYMKTGNCKFGINCKFNHPINRRKNQAVKEWPAEREEEQAERSGQTECKYYLRSGGCKFGKDCKYNHTKGKDLTTEEVAELNFLGLPIRLVCIYEASFIYHLLSFGANCKFNHPDPTTVGGSESSPGYSNGGSDPSSRYSNGRSNTSSGYSNGGSISLHGVSQQSVSTWSSPRTVNETSPFVPMMLSPPSPDWNAYQAPTYLSERSMHPPPPYVMNNPVIETNVYIHPQKRIQVDDFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIATLPPCNLNDKGLPLRPDKNACMHYTRYGLCKFGPACKYDHPINPVPPTGVEVDGMGGNGGAVQ 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01642 522 ProSiteProfiles Zinc finger C3H1-type profile. 428 456 IPR000571 GO:0046872
Aip01g01642 522 Gene3D - 156 220 - -
Aip01g01642 522 SUPERFAMILY CCCH zinc finger 233 257 IPR036855 GO:0046872
Aip01g01642 522 SUPERFAMILY CCCH zinc finger 180 210 IPR036855 GO:0046872
Aip01g01642 522 PANTHER PROTEIN PHOSPHATASE RELATED 329 505 - -
Aip01g01642 522 Gene3D - 419 502 - -
Aip01g01642 522 Gene3D - 221 308 - -
Aip01g01642 522 SUPERFAMILY CCCH zinc finger 433 458 IPR036855 GO:0046872
Aip01g01642 522 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 329 505 - -
Aip01g01642 522 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Aip01g01642 522 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Aip01g01642 522 SMART c3hfinal6 428 455 IPR000571 GO:0046872
Aip01g01642 522 SMART c3hfinal6 475 501 IPR000571 GO:0046872
Aip01g01642 522 SUPERFAMILY CCCH zinc finger 476 503 IPR036855 GO:0046872
Aip01g01642 522 MobiDBLite consensus disorder prediction 306 361 - -
Aip01g01642 522 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Aip01g01642 522 MobiDBLite consensus disorder prediction 149 177 - -
Aip01g01642 522 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 24 321 - -
Aip01g01642 522 Pfam RNA-binding, Nab2-type zinc finger 293 302 - -
Aip01g01642 522 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Aip01g01642 522 MobiDBLite consensus disorder prediction 7 56 - -
Aip01g01642 522 MobiDBLite consensus disorder prediction 1 98 - -
Aip01g01642 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 477 500 IPR000571 GO:0046872
Aip01g01642 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 255 IPR000571 GO:0046872
Aip01g01642 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 207 IPR000571 GO:0046872
Aip01g01642 522 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 430 455 IPR000571 GO:0046872
Aip01g01642 522 ProSiteProfiles Zinc finger C3H1-type profile. 474 502 IPR000571 GO:0046872
Aip01g01642 522 PANTHER PROTEIN PHOSPHATASE RELATED 24 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01642 Aip-Chr1 62108982 62112488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01642 142 505 C3H Transcription Factor Family AT1G04990 32.011 4.51e-50 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip01g01642 zf-CCCH 1.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01642 - - adu:107491206 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01642 01 62108982 62112488 Aip01g01642 01 62108982 62112488 PCT