Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01636 ATGGATGGTAGAAGGCATTCAGTTGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGGGTGAGGTCACTGAGGGATCCATCAACTAACTGCATTAACAAGCTCTCTCCTTTGATTGACAATGTTCAATGGGAAAACGGTTCCAATAATGGGATTTCGCTGCACTTCCTCGAAGCTTCTCATGCATGCGGTTCTAGTGATAACAATGATGGTTTTAGATCAAAGACTTTAGAATTCAAGGGACATAGAGAGCAGGATACTGCTGATTTTGAGCTGAATTGTGGCCTTTTGAACTCTAAGAGGAACTATCATGGGATATCCTGCCAGGAAACAAAGCGAGACGACGAGCTAGTTTATTCTAATGCTTATCAGCAAGGCATTGTTGGGAATAAATCACCGAGTGAAAGCTGTAGCAGCAACTATGGAGGTAGAGGGTTGGATCTGGCTGGCATGGTGCCGTCTGTTAATCATTTGAGGGACGGGGAATTGTGCTATTTATCTTCGCAGTTAGGGAGGGTAGATAACTTGAAGCAAACCCGAAAGTCGCAGCGCAGGACTACAAAAGTTAAACCATCTGAAGCGACAGGTGATACTGTGAGCCATGTAGGTAGTCCACACCTTTCTTTTGGTGATGCTCTCTCAGCTCATAGTGCTTCAGTACGAATAACTCAAGATGCTTTGGATAATCTACATGGATGTGGAATAAGCTGTTGTTGGTCAAAATCACCAAGATTTAGAGAATCAAATCATTATTCTGAAGTAGAAGATCTTCCTTTGTTATTGCAGCAAGCTAATGAGACTGATCTTTATGGATGCAGAAGCACAAGAAACGTAGGTGGCGGAGATAGTCCAAATTTGGAAACTCCAAGAAGTTTATCAATGAAATTTAAGCCAAAATCTTTTGGTGATTTGGTGGGGCAAAATGTGGTTGGAAGGTCACTTATGGGGGCCATTTCCAGTGGAAGGATAACATCATTTTACCTTTTCCATGGTCCCCGTGGTACCGGAAAGACATCTGCGTCTAGGATATTTTCTGCGGCATTAAATTGCCTATCCCTTGAGGTGCAAAGGCCATGTGGTATGTGTAAAGAGTGTATTTCGCTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGATTCCTTGAGAATCAACCATGTAGACAAGGTTAAGTCCCTAATTAAGAGTGCTTGTATTCCTCCGGTTTCGTCACGCTTTAAGGTGTACATTATCGATGAGTGCCAGTTCTTGAACGGGGAAACATGGGCTACTCTTTTGAATAGCCTAGATAATGTTTCTCAATATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACCTTCCTCGAAGTGTGGTTTCCCGGGCTCAGAGGTATCACTTTCCAAAGATTAAAGATGTTGATATCGCGAGCAGATTAGAAAAAATCTGTGTTGAAGAAGGTCTTGATTTTGAACAAGTTGCTTTGGATTTTATTGCTGCTAAATCTTGTGGTTCTCTTAGAGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAAATCACACTTACCTTAGCCCATGAGCTCACTGGTGTCGTTTCAGATGATGAATTGCTTGACTTGTTGGACCTGGCTTTGTCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAGCTGATGAGATCGCGGATAGATCCATTACAACTTGTTTCACAGCTTGCAAATCTTATTATGGACATTCTTGCAGGGAAGTCTGAAGTCGGTGATTCCGAAATCAGAAGAAGATTCTTGATTAGACAAACCTCTGAAGCAGACATGCAGAAATTGAGTCATGCGTTAAAAGTACTTTCAGAAACAGAGAAGCAATTGAGAATTTCAAAGAATCAAAGAACATGGTTCACAGCAGCGCTTCTACAATTAAGTGCCGAAGAATATCCACCTGCTGATGCAACTGATGACAAGTTGTATTTGAAAGGTGCTACCAATAGAGGGGAGAGCTTGAAGAATAATGCTACAGGTCAATGTGATGAAAAGTCATATAGATTAGGATTGCAAGAGGATCAGAAAAGAACTTTGGATTCCATATGGTATAAAGCTACAGAGATATGCCAATCAAGCCGGCTCAAGGCTTTTCTCAGGAAGCAGGGAAAGTTATCTTCGCTTTGTGTCAATCAAGGCCTTGCAGCTGCTGAGTTGGAATTCCACCGTCGTGACAGTGTAGCTAGAGCCGAGAAGTCGTGGAAACTGATTGCAAGTTACCTGCAGATCATATTGGGTTGCAACATTGAGCTCAGGATCAATTACGTACCTTGTGCCACAGCTTCTAGGTATGCCAGACTAAAGAGGTCATCTTTCAATTTCTTTAATTGTTCCCGAAGAATTCTACGGAAATCGATGCCTTCTGACGACCAAGGAAGCGAATCAGACTATGCTGATCAAACTTCTGAGAAGCCTATGATGAAAGATCAGACTCTAACTTGTTCCTCTGAGTTTGGTTCTCGGGTGCCACTACCTGATGTTGTAGCAGCTTTGAGAAGTTGCGAAGAAGGATTTTGTTTTCTCAAGCCACTATGTTTATCCCCCACAACTCTAACAACTGTGTCAAGCCGCCAAGGAAAACCAAAACTATTCATTCAAATTTACTCTGGAGGACCCTGCAACACTCAAGGAAGGCACGGATATGGTACTCAAGCAACAAAACTCGGACACCGCGACCGAGTAACTGAAGAGTTTATCACCTTGCAGCAAGAGCTTCCTTGCGTTGCATATCTTGGAAAATTTTGTGAGTAG 2784 0.4221 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNCINKLSPLIDNVQWENGSNNGISLHFLEASHACGSSDNNDGFRSKTLEFKGHREQDTADFELNCGLLNSKRNYHGISCQETKRDDELVYSNAYQQGIVGNKSPSESCSSNYGGRGLDLAGMVPSVNHLRDGELCYLSSQLGRVDNLKQTRKSQRRTTKVKPSEATGDTVSHVGSPHLSFGDALSAHSASVRITQDALDNLHGCGISCCWSKSPRFRESNHYSEVEDLPLLLQQANETDLYGCRSTRNVGGGDSPNLETPRSLSMKFKPKSFGDLVGQNVVGRSLMGAISSGRITSFYLFHGPRGTGKTSASRIFSAALNCLSLEVQRPCGMCKECISLFSGRSKDVKEVDSLRINHVDKVKSLIKSACIPPVSSRFKVYIIDECQFLNGETWATLLNSLDNVSQYVVFVMITPDLDNLPRSVVSRAQRYHFPKIKDVDIASRLEKICVEEGLDFEQVALDFIAAKSCGSLRDAEMMLDQLSLLGKKITLTLAHELTGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKSEVGDSEIRRRFLIRQTSEADMQKLSHALKVLSETEKQLRISKNQRTWFTAALLQLSAEEYPPADATDDKLYLKGATNRGESLKNNATGQCDEKSYRLGLQEDQKRTLDSIWYKATEICQSSRLKAFLRKQGKLSSLCVNQGLAAAELEFHRRDSVARAEKSWKLIASYLQIILGCNIELRINYVPCATASRYARLKRSSFNFFNCSRRILRKSMPSDDQGSESDYADQTSEKPMMKDQTLTCSSEFGSRVPLPDVVAALRSCEEGFCFLKPLCLSPTTLTTVSSRQGKPKLFIQIYSGGPCNTQGRHGYGTQATKLGHRDRVTEEFITLQQELPCVAYLGKFCE 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01636 927 MobiDBLite consensus disorder prediction 796 817 - -
Aip01g01636 927 SUPERFAMILY post-AAA+ oligomerization domain-like 535 637 IPR008921 GO:0003677|GO:0006260
Aip01g01636 927 MobiDBLite consensus disorder prediction 802 817 - -
Aip01g01636 927 CDD HLD_clamp_pol_III_gamma_tau 465 528 IPR045085 -
Aip01g01636 927 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 109 856 - -
Aip01g01636 927 Gene3D - 467 528 - -
Aip01g01636 927 Gene3D - 529 641 - -
Aip01g01636 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 514 IPR027417 -
Aip01g01636 927 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 292 638 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Aip01g01636 927 CDD AAA 328 456 - -
Aip01g01636 927 MobiDBLite consensus disorder prediction 178 204 - -
Aip01g01636 927 Pfam DNA polymerase III, delta subunit 308 465 - -
Aip01g01636 927 Gene3D - 286 463 IPR027417 -
Aip01g01636 927 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 109 856 - -
Aip01g01636 927 MobiDBLite consensus disorder prediction 178 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01636 Aip-Chr1 61461902 61466545 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01636 284 621 Core DNA Replication Machinery Family AT1G21690 25.882 1.13e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01636 - - pvu:PHAVU_003G207500g 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01636 01 61461902 61466545 Aip01g01636 01 61461902 61466545 ECH
Aip01g01636 01 61461902 61466545 Aip01g01636 01 61461902 61466545 PCT