Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01630 ATGACAACCACTTCCCTTCTCTTTCTCTTTCTCTTTCTCTTCTCTCTCCTCTCCCCGGCCCTCATTTCCTCTTCCCCTGTCCAAGACCCTGAATTGGTAGCTCAAGAAGTGACCAGGCAAATCAATGCGTCTGTTGCTAGGAGGAACTTGGGGTACTTGTCTTGCGGGACAGGTAACCCAATCGACGACTGTTGGAGGTGTGATCCGAATTGGGAGAAGAACAGACAGAGGCTTGCAGACTGCGCTATCGGCTTCGGGAAGAACGCCATTGGCGGAAGGGACGGAAAAATCTACGTGGTGACTGATTCTGCTGACGACAACCCAGTGAACCCGAAGCCGGGGACGCTTCGCTATGCAGTGATTCAGGACGAGCCCTTATGGATCATATTCGCAAGGGACATGGTGATTCAGTTGAAGGAAGAACTTATAATGAACTCCTTCAAGACCATAGATGGGAGAGGTGCTAGCGTGCACATTGCTGGTGGACCATGCATAACAATTCAGTATGTGAATAACGTTATAATACATGGTATTCACATACATGATTGTAAGCAAGGTGGGAATGCTATGGTGCGTGACTCCCCACGGCACTACGGGTGGAGGACTCTATCGGACGGTGATGGGGTCTCCATATTTGGCGGGAGCCACGTGTGGGTTGATCATTGCTCCTTGTCTAACTGCAGGGACGGTTTGATTGATGCCATTCACGGCTCCACCGCAATTACAATTTCTAACAATTACATGACGCACCATGATAAGGTTATGTTGTTGGGTCATAGTGATACATATACACAAGACAAGAATATGCAGGTTACTATTGCTTTTAACCACTTCGGTGAAGGCCTTGTTCAGAGAATGCCAAGGTGTAGGCATGGGTATTTCCATGTGGTGAACAATGACTACACACACTGGGAAATGTATGCCATTGGTGGAAGTGCCAACCCAACCATCAATAGCCAAGGCAACAGATTTGTAGCACCAAATGACAGGTTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAGTGAATGGAGGGGTTGGAATTGGAGGTCAGAAGGGGACTTATTGGTAAATGGTGCATTTTTCACTGCATCTGGGGCTGGAGCCTCTTCAAGTTATGCAAGGGCTTCAAGTTTGAGTGCAAGACCATCCACTCTTGTGGGCACTATAACAACTGGTGCAGGTGCACTCGTTTGTAAGAGGGGTTCTCGTTGCTGA 1224 0.4828 MTTTSLLFLFLFLFSLLSPALISSSPVQDPELVAQEVTRQINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRDGKIYVVTDSADDNPVNPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVNNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNDRFSKEVTKHEDAPESEWRGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSTLVGTITTGAGALVCKRGSRC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01630 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Aip01g01630 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Aip01g01630 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Aip01g01630 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
Aip01g01630 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Aip01g01630 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Aip01g01630 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Aip01g01630 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Aip01g01630 407 PANTHER PECTATE LYASE 4 404 - -
Aip01g01630 407 Pfam Pectate lyase 141 324 IPR002022 -
Aip01g01630 407 SUPERFAMILY Pectin lyase-like 40 401 IPR011050 -
Aip01g01630 407 SMART amb_all 133 330 IPR002022 -
Aip01g01630 407 Gene3D - 58 400 IPR012334 -
Aip01g01630 407 PANTHER PECTATE LYASE 18-RELATED 4 404 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01630 Aip-Chr1 61241052 61243221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01630 1 407 Polysaccharide Lyase AT5G63180 80.929 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01630 K01728 - gmx:100101868 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01630 01 61241052 61243221 Aip03g00186 03 1874771 1877771 ECH
Aip01g01630 01 61241052 61243221 Aip01g01630 01 61241052 61243221 ECH
Aip01g01630 01 61241052 61243221 Aip01g01630 01 61241052 61243221 PCT