Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01617 ATGGCAACCATGCCTCTCTTCAAGTCCTTTACATTGGCATCACAATCATGGCTACTCTCTCCCCCGTCACTCTTTTACACCAAACCCAAACACTGCCCTTTTCACTCACTTCGTCATTCTTCTAGACCACTCAGATTTCAAGTTGCATCCTTCAATTCTTCTTCGTTCCTTTCACTTTCACGCTCTCTATGCCTCACCACGAGGACCATTCATCATTCTCCTATGCTCACCTTTGTCGCACAAGCATCAGATTGGCCTCAGCAACAAGAAGTTGATGGTGAAGAAGAAGAAGCAACGTGGGAGAACGAAGGCGAACCCAAATGGGTAAACCAAGATGATGAAACTGAGGCTGTGATTGATGGTAGTGAGGGAGAAGGGGAAGGTGGGTTTGATGAAACTTCTGAGGATGCAAAACTCTTTGTTGGTAACTTGCCTTTTGATGTTGATAGCCAGAGACTTGCCATGCTCTTCGAGCAGGCCGGAACGGTGGAGATAGCCGAGGTAATTTACAATAGGGCAACCGATCGGAGTCGCGGGTTTGGATTTGTAACAATGAGTACAGTTGAGGAAGCTGACAGAGCTGTGGAGAAGTTCAGTGGCTATGAGTTAGATGGAAGAACGTTGACTGTTAATAAGGCTGCTCCAAGAGGATCGCAGCCGGAGCGGTCACCGCGCACCTTTGATTCCTCGTTAAGAGTATATGTTGGTAACTTGCCTTGGGATGTTGATAATATTCGACTAGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGCAAGCTCGGATAGTGTATGACAGAGAGACTGGTAGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATGAATGATGCCATTGCTGCTCTTGATGGCCAGAGCTTGGATGGGCGGTCACTCAGAGTGAGTGTTGCTGAGGATAGGCCCAGACGCAGCTTCTGA 948 0.4726 MATMPLFKSFTLASQSWLLSPPSLFYTKPKHCPFHSLRHSSRPLRFQVASFNSSSFLSLSRSLCLTTRTIHHSPMLTFVAQASDWPQQQEVDGEEEEATWENEGEPKWVNQDDETEAVIDGSEGEGEGGFDETSEDAKLFVGNLPFDVDSQRLAMLFEQAGTVEIAEVIYNRATDRSRGFGFVTMSTVEEADRAVEKFSGYELDGRTLTVNKAAPRGSQPERSPRTFDSSLRVYVGNLPWDVDNIRLEQIFSEHGKVEQARIVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRSLRVSVAEDRPRRSF 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01617 315 CDD RRM_HP0827_like 232 308 - -
Aip01g01617 315 SMART rrm1_1 232 305 IPR000504 GO:0003723
Aip01g01617 315 SMART rrm1_1 138 211 IPR000504 GO:0003723
Aip01g01617 315 SUPERFAMILY RNA-binding domain, RBD 134 225 IPR035979 GO:0003676
Aip01g01617 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Aip01g01617 315 PANTHER RIBONUCLEOPROTEIN 6 314 - -
Aip01g01617 315 CDD RRM_HP0827_like 138 215 - -
Aip01g01617 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 231 309 IPR000504 GO:0003723
Aip01g01617 315 Gene3D - 220 314 IPR012677 -
Aip01g01617 315 Gene3D - 80 219 IPR012677 -
Aip01g01617 315 SUPERFAMILY RNA-binding domain, RBD 225 313 IPR035979 GO:0003676
Aip01g01617 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 233 303 IPR000504 GO:0003723
Aip01g01617 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 208 IPR000504 GO:0003723
Aip01g01617 315 PANTHER OS02G0815200 PROTEIN 6 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01617 Aip-Chr1 60364781 60368558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01617 107 313 Eukaryotic Initiation Factors Gene Family AT3G16380 31.507 7.08e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01617 - - gmx:100811487 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01617 01 60364781 60368558 Aip03g00177 03 1788991 1792102 ECH
Aip01g01617 01 60364781 60368558 Aip01g01617 01 60364781 60368558 ECH
Aip01g01617 01 60364781 60368558 Aip01g01617 01 60364781 60368558 PCT