Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01609 ATGTCAGGTGGATTATGTGCTCCTACACCACCGCCGCCGCAAGGGGTGGCATACTGCCGCCGTCCGTCCGTCTATCTAGCTTCCCTCGTGCTCCAAGTCTTCAACCCCCGTTTGCTGTCACTAATCTCAGCCGCGCTTCCGCCGCCGTTGGTTGCCGTTAACGTTCGTGTCTTCGTTCAGCCGTCGTCTTCGTTCGCGTTGTTCGCCGTTCAAGTTTGCTCGGCGTTCATCGTTCGCGTTCACTCGCCGTTCACTGGTCGCGTTTACTCGCCGTTCACCGTTCGGagcggttcctcgtcatttctgcttctcccctccttgCTGGCATCGTTTCTGCTTCTATGCTCCAAACTGTGTCTCACCGTCGTTGCTTCTCTTCTTCGCGTGGAGTCTCGCAGTCAAAGCGACTACCTTTCGTCGTGTCTCAAGTCTCTAGTCTCTGCTTCAACCCTCTCAGGTCTCAGGTCTCAGGTCTCAATTCTCTTCTTCTCTGCTTCAAGCCTTCAACCCTCTCAGATCCCCAACAACCGCCGCAAAATGACTCGCCAAGGAGCTTATAAAGAAAGCGATGACATGCTCATTGATGAACCAAAACTGCCTCAGCAAGGCCAAATCGCGGCCCTTCCTAATGAGTTCAACCCCAGTTATCTGAAAATATATTACAGTAAGCTGTTTCCTCATGCTGATTTATATAGATGGATGTCATACGGCAACGATGGGAAGCATCCTGCTTGTGATTCATCTTACTTGGGACGAAGGGAATTCTCGTACACTCTAGATAACGATATATTTGTGTGCTACAATACCTTCAATAGTGCCACCGAACTTGAAAACTCCATCAAAGACAAGTGCCCGTTAAAGATAGATATTGGACCCATCTACAACCTCAACGTAAGATATGAAAGCTTGAATGCTTATGCTGGAGATAATGTTCTCACTCCGGTTGAGAGGGAGCTGATTTTTGATATAGATATGTCAGATTATGATGATGTTAGATACTGCTGCTCAGGTGCTGATGTTTGTCTCAATTGCTGGCCATTAATGACTGTAGCTGTCAAAGTAGTAGATACTTCCTTAAGAGATGACTTTGGGTTTAGACATATTCTCTGGGTATATAGTGGTCGACGTGGTGTACATTGTTGGGTCTGTGATAGAAAGGCAAGACGGTTGACTAATGAGCAGAGAGCAGCAGTTGCGGACTATTTTCGTGTCTACAAGGGAAATGAAAATAACTATAAGAAGGTTTCCTTGATGGGTCAAGTTCTGCATCCCTTTCTGGCGAGATCATATACTGAAGTTCTGAAGGAATATTTTGAGACAAAACTGCTTACAAGTCAAAATTTACTTTCTAGCGAGGAGAGATATGAAAAGATCCTAGAGATGATTCCTGATCAATCTATTGCTTCTGAACTTCGAGGAAAGTGGCAAGAAAGTAGGCGGTCTTTTAGTGCAAAAGAAGACATTAATATTGTTCGATGGGAGCAGCTTAAACAGTTGCTGCAAAAACATAAGGCACAAGTGGTGCGTAGGTGTGTTGAAGAGATTGTGTTCACCTATACATATCCTAGGCTTGATATGGAGGTTTCTAAACATATGAACCATTTGCTCAAAGCACCCTTCTGTGTGCACCCAAAAACAGGCTGTGTTTGTGTCCCCATCAACCCAAATAATTGTGAAGAATTTGATCCCACGACGGTGCCAACCCTTATCCAGCTTTTGGAAGAGCTGAATAGGGAGGGCTTGAGGTCTGATGTTGAAGGAGAATGGAATAAAACTTCACTTGCAAATGCCATCAAACTCTTTAGGTCATCCTTCCTCCAGCCATTACTGAAAATTTGCAAGGAGGAAATGGAAAGCTCCTATAATGCGAAACTACAGCAGTCGAAAAATCTCCTTAGTTGGTAG 1905 0.4425 MSGGLCAPTPPPPQGVAYCRRPSVYLASLVLQVFNPRLLSLISAALPPPLVAVNVRVFVQPSSSFALFAVQVCSAFIVRVHSPFTGRVYSPFTVRSGSSSFLLLPSLLASFLLLCSKLCLTVVASLLRVESRSQSDYLSSCLKSLVSASTLSGLRSQVSILFFSASSLQPSQIPNNRRKMTRQGAYKESDDMLIDEPKLPQQGQIAALPNEFNPSYLKIYYSKLFPHADLYRWMSYGNDGKHPACDSSYLGRREFSYTLDNDIFVCYNTFNSATELENSIKDKCPLKIDIGPIYNLNVRYESLNAYAGDNVLTPVERELIFDIDMSDYDDVRYCCSGADVCLNCWPLMTVAVKVVDTSLRDDFGFRHILWVYSGRRGVHCWVCDRKARRLTNEQRAAVADYFRVYKGNENNYKKVSLMGQVLHPFLARSYTEVLKEYFETKLLTSQNLLSSEERYEKILEMIPDQSIASELRGKWQESRRSFSAKEDINIVRWEQLKQLLQKHKAQVVRRCVEEIVFTYTYPRLDMEVSKHMNHLLKAPFCVHPKTGCVCVPINPNNCEEFDPTTVPTLIQLLEELNREGLRSDVEGEWNKTSLANAIKLFRSSFLQPLLKICKEEMESSYNAKLQQSKNLLSW 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01609 634 PANTHER DNA PRIMASE 223 634 - -
Aip01g01609 634 TIGRFAM primase_sml: putative DNA primase, eukaryotic-type, small subunit 218 575 IPR014052 GO:0003896|GO:0006269
Aip01g01609 634 CDD AE_Prim_S 226 563 IPR014052 GO:0003896|GO:0006269
Aip01g01609 634 Pfam DNA primase small subunit 321 554 IPR002755 GO:0003896|GO:0006269
Aip01g01609 634 SUPERFAMILY Prim-pol domain 212 577 - -
Aip01g01609 634 Gene3D DNA primase, PRIM domain 203 615 - -
Aip01g01609 634 PANTHER DNA PRIMASE SMALL SUBUNIT 223 634 IPR014052 GO:0003896|GO:0006269
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01609 Aip-Chr1 59678942 59686392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01609 180 634 Core DNA Replication Machinery Family AT5G41880 61.790 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01609 K02684 - tcc:18606689 696.041