Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01606 ATGAACAAACTCAGACAGTCATCATTTGACGAGTACATATCTACGTGTTCCTCTTCGGAAGCGAGCTCATCCAACAATAACAAGTCATCGCCGCCAAACGCCTCCATCGACTACGACGAAGCGATAACGTTGGCGTCATCGAGGCCGAAGAAGCGTGCGGGGAGAAGAATCTTCAAGGAAACGAGGCACCCGGTGTACCGAGGAGTGCGTAGGAGAAACAACAACAGGTGGGTCTGCGAGCTTCGCGTTCCAAATACCAAGTCCAAACGGATATGGCTCGGGACCTACGCCACACCTGAGATGGCGGCGCGTGCCCACGACGTCGCCGCACTCGCGCTTCGCGGGAAGTCAGCCTGCCTCAACTTCGCAGACTCTGCCTGGCGACTACTCCCTTTGCTCCCGGCGCCTACTGATGGCGCCGAAGAGATAAGGAGAATGGCCGCGGAAGCTGTGAAGACAGTTACAGTTGAGGACGGTTATAGTAATAACCGACGTCCAGTAAGGACGGGCAGTGCGGTTACTGAGTACGAGGTTTGCAGCGGTGAGAGCGGGGTGGAAGAAGATGTAAAGAAGGATTTGATTGTTGATACTAACAACGATGATTATTACATGCATGATTGGGTTCGGAGCATGACGGAGGAGCCGTTACGATCACCGCCTCCATTTTTCAGATACGATTTTGGCAGTAGCAGCAGTAGTCATAGGGAGTGGAATGATATGGAGGTTGATGCTGAGGTGTCACTGTGGAGCTTTTCCATTTGA 762 0.5276 MNKLRQSSFDEYISTCSSSEASSSNNNKSSPPNASIDYDEAITLASSRPKKRAGRRIFKETRHPVYRGVRRRNNNRWVCELRVPNTKSKRIWLGTYATPEMAARAHDVAALALRGKSACLNFADSAWRLLPLLPAPTDGAEEIRRMAAEAVKTVTVEDGYSNNRRPVRTGSAVTEYEVCSGESGVEEDVKKDLIVDTNNDDYYMHDWVRSMTEEPLRSPPPFFRYDFGSSSSSHREWNDMEVDAEVSLWSFSI 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01606 253 SUPERFAMILY DNA-binding domain 65 125 IPR016177 GO:0003677
Aip01g01606 253 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Aip01g01606 253 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Aip01g01606 253 CDD AP2 66 125 IPR001471 GO:0003700|GO:0006355
Aip01g01606 253 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 4 253 - -
Aip01g01606 253 MobiDBLite consensus disorder prediction 15 35 - -
Aip01g01606 253 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Aip01g01606 253 Pfam AP2 domain 64 115 IPR001471 GO:0003700|GO:0006355
Aip01g01606 253 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 4 253 IPR045277 GO:0003700
Aip01g01606 253 Gene3D AP2/ERF domain 65 124 IPR036955 GO:0003700|GO:0006355
Aip01g01606 253 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01606 Aip-Chr1 59514043 59515245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01606 42 251 AP2-EREBP Transcription Factor Family AT1G12610 46.154 1.37e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip01g01606 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01606 - - pvu:PHAVU_003G212800g 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01606 01 59514043 59515245 Aip01g01606 01 59514043 59515245 ECH