Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01587 ATGGGAAGGCAACCTTGTTGTGACAAACTTGGTGTGAAGAAAGGACCATGGACTGCTGAGGAAGACAAGAAGCTTATAAACTTTATTCTCACAAATGGTCAGTGCTGCTGGCGTGCTGTGCCCAAGCTGGCCGGCCTCCGCCGATGCGGCAAGAGCTGCCGCCTTCGCTGGACTAATTACCTTCGCCCGGACTTAAAGAGAGGACTCCTCACTCAGGCAGAGGAGCAGCTTGTTATTGATCTTCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCAGCAAGGTTACCAGGAAGAACAGACAATGAGATCAAGAATCATTGGAACACACACATCAAGAAAAAGCTTCTTAAGATGGGGATTGACCCTGTCACTCATGAACCTCTCAATAAAAAGGAAAGTTCCTCCCCTGAAGACCAAAAGAATTTGCAACAACAAGAGCCTAAGGAAGGTAATAATGGGGATCTCAACTCTGAGGAAAATAATTCAAATTCATCATCCCCAACTGAAAATTCTTCTTCAGGAGAAGAATCTCTTTTGCTAGATAGAATTTGCAGCGATGATTCTCTAATGATGGATGATTTATGGATGGATCATGAAAATACACTAGTGGATGCATTGTTATGGGACACTACCCCTAAAGTGGAGGGCACAAACACAAACACAAACAATGTTGACATGGGACTCACAGTGCCATCTTGGGAGGATAATAACAATTATGCTTGGTTATTGGACTTTGAGGACATTGGTGTTCATGATTTTGGTTTTAATTATTGTTTCAATGAGATAGATCATTCAAATGCAATGCAAACTATAGGGAGTGAAAGAAAAGGGTCATTAGCGTGA 846 0.4303 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKKESSSPEDQKNLQQQEPKEGNNGDLNSEENNSNSSSPTENSSSGEESLLLDRICSDDSLMMDDLWMDHENTLVDALLWDTTPKVEGTNTNTNNVDMGLTVPSWEDNNNYAWLLDFEDIGVHDFGFNYCFNEIDHSNAMQTIGSERKGSLA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01587 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip01g01587 281 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip01g01587 281 Gene3D - 70 172 - -
Aip01g01587 281 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip01g01587 281 CDD SANT 16 61 IPR001005 -
Aip01g01587 281 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 237 - -
Aip01g01587 281 Gene3D - 12 67 - -
Aip01g01587 281 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip01g01587 281 SMART sant 13 63 IPR001005 -
Aip01g01587 281 SMART sant 66 114 IPR001005 -
Aip01g01587 281 MobiDBLite consensus disorder prediction 139 177 - -
Aip01g01587 281 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 1 237 - -
Aip01g01587 281 MobiDBLite consensus disorder prediction 125 177 - -
Aip01g01587 281 CDD SANT 71 112 IPR001005 -
Aip01g01587 281 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Aip01g01587 281 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Aip01g01587 281 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01587 Aip-Chr1 58270621 58272734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01587 1 256 MYB Transcription Factor Family AT4G22680 58.182 3.97e-98 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g01587 Myb_DNA-binding 3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01587 K09422 - gmx:100786965 374.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01587 01 58270621 58272734 Aip01g01587 01 58270621 58272734 ECH
Aip01g01587 01 58270621 58272734 Aip01g01790 01 81050987 81052535 PCT