Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01557 ATGGAGTCGAGCGCCGGCGGCATCAGCGGCGGCGTTACGGTGGTCGGATCAGATGCTCCGTCGGAGTATCAAATAGCTCCGAGGACAGAGAACCCTTCTCCGGCAGGAGGATCGGCCGCGCCAATCCCTGCGCCAGCTCCGACGAACCAAGGCGGTGCTCTGCCGCATCCTCCGCCACATATGGCGAAGATGACATCGCCTCCGGCAACAGCGCTGGGGAAGAAGAAGAGAGGGCGGCCCAGAAAGTATGGCCCAGACGGGTCAGTGGTGGCGCTGTCCCCAAAGCCAATATCGTCTTCGGCACCGCTGGCGTTGCCGCCGGTGATCGATTTCTCGGCGGAGACGAAGCGCGGGAAGGTGAAGGCGGCTGGTACAGTGAGCAGAGCCAAGTTTGAGGTTGAGAATTTAGGTGAATGGGTTGCATGCTCGGTTGGTGCTAATTTCACACCCCATTTCATCACTGTTAATCCTGGGGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGCCCACGAGCTATATGCATTTTGTCAGCAAATGGAGTCATATCAAGTGTTACACTTCGTCAGCCCGATTCTTCTGGTGGCACATTGACGTATGAGGGACGTTTTGAAATTCTATCTCTAAGCGGCTCGTTCACACCAAGTGAAACTGCAGGAACACGAAGCAGATCGGGTGGCATGAGTGTCTCTTTAGCAGGTCCAGATGGACGAGTTATAGGTGGTGGAGTCGCTGGTCTATTGGTGGCTGCAAGTCCCGTGCAGGTAGTGGTTGGAAGTTTTCTAGCAGGGAACCAACATGAGCAAAAGCCAAGAAAACCAAAACCTGATATTATAGCATCAACTGTGATGCCGGCTGCGAGTGTTCCTGTGTCAACGGCCGATCCAGTTGCTGTTCTGCAATCGCAGGCTTCCTTCCGAGGAGATAGTTGGTCTGCTGTTCCTGCAGATGTGAATAAGAACAAGCCGGCTGACATTAATGTGTCGCTTCCTGGAGGGTAA 1008 0.5377 MESSAGGISGGVTVVGSDAPSEYQIAPRTENPSPAGGSAAPIPAPAPTNQGGALPHPPPHMAKMTSPPATALGKKKRGRPRKYGPDGSVVALSPKPISSSAPLALPPVIDFSAETKRGKVKAAGTVSRAKFEVENLGEWVACSVGANFTPHFITVNPGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFTPSETAGTRSRSGGMSVSLAGPDGRVIGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKPKPDIIASTVMPAASVPVSTADPVAVLQSQASFRGDSWSAVPADVNKNKPADINVSLPGG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01557 335 CDD DUF296 149 263 IPR005175 -
Aip01g01557 335 MobiDBLite consensus disorder prediction 48 64 - -
Aip01g01557 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 265 - -
Aip01g01557 335 Gene3D - 150 277 - -
Aip01g01557 335 MobiDBLite consensus disorder prediction 1 91 - -
Aip01g01557 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 10 333 - -
Aip01g01557 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 150 263 IPR005175 -
Aip01g01557 335 ProSiteProfiles PPC domain profile profile. 145 288 IPR005175 -
Aip01g01557 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 333 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01557 Aip-Chr1 54640018 54645427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01557 4 332 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 59.654 3.12e-126 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01557 - - gmx:100801730 427.172