Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01556 ATGAAATACTATAGTACGTTGTTGGATGGTATTGGAATTGAGAAAAGATCAGAAGAACACACTCAATTTCATCGGAAGAACCTTTTCATTCTCTGTTCCATCAGCTTCGGTTTTCTTGTGTCCGCACAATGGAGTGGTACGACCGGTCCAGTTAGGGTTCCCGATCTGATCCATCGCCGGAGTGGACTGGAACTCGTCTCGAAGAGCCGGTGTGGCAAATTGGGTTGGATGCTGAAAAGGAATCTTATCCCCAAAGGCCTGGTCGAGGTTGTTGGTGCTGTTGCTAAGACTAGAGGAGGGGAGTACTCGGAGCGAATTGGCCAGCCTTTATGCCAGTATTACATGAAGACAGGGTCATGCAAATATGGTTCTTCCTTCAAGTACAACAATCCTAGGCAGGCTGGAGGCTCTGCTACCCCTATGTCACTAAATTATAAACGTGGAGGAGATGAAGATGAGTTTTATATCTCCATGTTTTCAAGTTGTGGATGCATTTGTGTGCTGTACGTTTATTTTCCTGAGAGTATTCTGAGATATGCTCTATGA 546 0.4505 MKYYSTLLDGIGIEKRSEEHTQFHRKNLFILCSISFGFLVSAQWSGTTGPVRVPDLIHRRSGLELVSKSRCGKLGWMLKRNLIPKGLVEVVGAVAKTRGGEYSERIGQPLCQYYMKTGSCKYGSSFKYNNPRQAGGSATPMSLNYKRGGDEDEFYISMFSSCGCICVLYVYFPESILRYAL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01556 181 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 88 146 - -
Aip01g01556 181 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 108 125 IPR000571 GO:0046872
Aip01g01556 181 PANTHER PROTEIN PHOSPHATASE RELATED 88 146 - -
Aip01g01556 181 ProSiteProfiles Zinc finger C3H1-type profile. 105 125 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01556 Aip-Chr1 54226599 54229210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01556 84 176 C2H2 Transcription Factor Family AT5G18550 40.594 6.94e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip01g01556 zf-CCCH 2.9e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01556 - - qsu:112020617 88.1965