Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01552 ATGCCACCGGAGGAGATTATCGCAGTAGGAGATTTCGCCGGAGGAGACCGTCGCAGGAGGAGATTGTCGTTGGAGGAGAGGTCACCAGAGAAGATCGCCGCTGAGGAAGATGATCTTAAATACTATATGCTAAAGGAAGATGTCAGTCCTTGTATATTTGGTCCAATAGAGAAGCAGAGATGGTCTTATGCCTGTGCAAAGCAAATGACCGATAGGCTAATATATGCTGAGCATGCGAAGAATGGCCTCAAGTTCACAATTGTACCACTATTTCAGCACATGGATGATCTGGTCTTAGAGAACATTTGTGACCGTGTGAGGAAAGTTGGGATGATGAAGAGCAGTAGCAGCAGAAAGAGTGCCAGAGCTTCACTACTAGAGAAGCCTATTTTGCCGCCATCCCGCTCTTTTTCCGGCGTCGATTTCGCCGGCGGTGATAGAATTGAATTTGTTGAAGCAACTGTTGAATATTGA 474 0.4641 MPPEEIIAVGDFAGGDRRRRRLSLEERSPEKIAAEEDDLKYYMLKEDVSPCIFGPIEKQRWSYACAKQMTDRLIYAEHAKNGLKFTIVPLFQHMDDLVLENICDRVRKVGMMKSSSSRKSARASLLEKPILPPSRSFSGVDFAGGDRIEFVEATVEY 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01552 157 PANTHER UDP-GLUCURONATE DECARBOXYLASE-RELATED 47 92 - -
Aip01g01552 157 Pfam NAD dependent epimerase/dehydratase family 48 93 IPR001509 -
Aip01g01552 157 Gene3D - 35 95 - -
Aip01g01552 157 PANTHER BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA 47 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01552 Aip-Chr1 53808824 53811939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01552 57 123 Ion Channels AT5G54250 39.744 9.44e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01552 K12449 - gmx:100814699 103.605