Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01545 ATGGATCCAATTACAACATCATCTTCACAAGGGCGTTCTCTTCTCCCTCCTTTCAACACACCAAGAGATCTCCAACTTCATCACTTTTCCAAGAAGGAGACAGACACAGAAACAGGCGAAGAATCTGAAATAACAAGAAGGCCACGCGGTAGACCCGCGGGATCCAAGAACAAGCCAAAACCACCCATCATCATCACGGGCGACAGCGCCAACGCGCTCCGCACGCACGTCATGGAAGTCGCAGACGGCTGCGACATCGTCGAGAGCGTCTCCGCCTTTGCGCGGAGGCGACAAAGGGGCGTGTGCATCATGAGTGGCACCGGCACGGTGGCCAACGTCACTCTCCGCCAACCGGCTTCAAGCAACGCGGTCGTGACCCTCCAAGGGAGGTTCGAGATATTGTCACTGGCGGGGTCCTTCCTGCCGGCGCCGGCTCCACCGGAAGCGTCACGGTTGACGATATACTTGGCCGGGGGGCAAGGGCAGGTGGTGGGAGGGAGTGTTGTTGGGACGCTGGTGGCTTCGGGGATTGTAGTGATCATGGCTGCTTCTTTTGGTAACGCTGCTTATGAGAAGCTTCCGTTGGAGGAAGATGACAACAATGGTGATGCTGCCACGTTGGCACTGCAACAAGGGGTTTCTTCTTCCATGGATTCCCCTGGGGCTAGTAGTAGTGTTCAGCATCAGCAGCAACATTATTCTTCACAGACACAGCTTTTGAGGGATGTAACTGCAACTCATCAACTTTTCCATCATGCTGGTTTGGTCAACGCTCCGAATATTGTGGGTTCTTCCGTTCATCATCAGATGCCTTCTGATCAAGATTTTTGGGCTTCTGGGCGCCCTCCATTCTGA 855 0.5427 MDPITTSSSQGRSLLPPFNTPRDLQLHHFSKKETDTETGEESEITRRPRGRPAGSKNKPKPPIIITGDSANALRTHVMEVADGCDIVESVSAFARRRQRGVCIMSGTGTVANVTLRQPASSNAVVTLQGRFEILSLAGSFLPAPAPPEASRLTIYLAGGQGQVVGGSVVGTLVASGIVVIMAASFGNAAYEKLPLEEDDNNGDAATLALQQGVSSSMDSPGASSSVQHQQQHYSSQTQLLRDVTATHQLFHHAGLVNAPNIVGSSVHHQMPSDQDFWASGRPPF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01545 284 CDD DUF296 74 147 IPR005175 -
Aip01g01545 284 MobiDBLite consensus disorder prediction 212 236 - -
Aip01g01545 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 33 284 - -
Aip01g01545 284 MobiDBLite consensus disorder prediction 25 50 - -
Aip01g01545 284 MobiDBLite consensus disorder prediction 1 16 - -
Aip01g01545 284 MobiDBLite consensus disorder prediction 1 64 - -
Aip01g01545 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 199 - -
Aip01g01545 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 74 186 IPR005175 -
Aip01g01545 284 Gene3D - 73 201 - -
Aip01g01545 284 ProSiteProfiles PPC domain profile profile. 70 210 IPR005175 -
Aip01g01545 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 284 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01545 Aip-Chr1 53142261 53143799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01545 41 284 AT-hook Motif Nuclear Localized (AHL) Family AT4G22810 58.300 1.20e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01545 - - gmx:100802044 303.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01545 01 53142261 53143799 Aip01g01545 01 53142261 53143799 ECH