LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g01544	ATGTACTGGAGAACGCAGAATCAAAGAATCCCTAGCCGCCTAGCCCTCCGCCTAGCCCTCCATCGTCGCCGCCTAACCCAGGTCATCAACGTCGCCACCGTCCCAGGTCCTCAGCACCGCCGCTTCTTCCTCCATCATCGCCGCCTAACCCAGGTGAATTTGAATATGGCAATAGTCAACTTGAAAGATGTGTTGTACACACGGAATGACGATGGTGTTGATTACGGCGATGTTGCTTCTCTCACCGACGACGACATATTAAGAAAGGCAAAGATTTTTTGCAATAGAGAAGGGGTCAGACATAGAAAACATTACAATCGGGTGGATAGGAGGAGGCCTCACAAGCCGGAGACAAGGACAAACCGTGAGGCGAGGATGTCCATATACCTTGACAGGAGCAATAACATCTGGAGGGTGAAGAAGGTTATCACGAAGCACAACCATGCGCTCACACATCATGGCATGGTTCACCTAATTCCAAATTTTCGGTCCATGACAGAAGCGGCAAAAGCTCAAATAAATGGGATGCAAGGGTGCGGAATCTCGACCTCGAAGACGATGCAGTACCTGGCCGGTGGGTATTCTCTAGTTGGTTTCCTGAAGAAGGATGCCTATAACTACGTTGACAGGAGTAGGCGTGCTAGAATAGCCGACGGGGATGCGAACTCGGCTATAGTGTACCTGGAGGGAAAAGTTGATACTGACCCGATGTCTATGCCGCGGTATAATGTGATTGCGGATGACATGCTAGCGAATTTACTCTGGGCAGACGGTGGAAGCAGGATTGACTACCAGTACTTTGACGATGTTCTTGCATTCGACTCAACATATAAGAAGAACAAGTATAATAGGCCGCTGGTTATTTTTTCTGGCTATAATAACCACAAGCAAACTTGTATATTTGAGTTTGGGTTGGTGTTAGATGAGAGCATCGCTTCGTATACATGGCTGTTGGAGAATTTTTTGGAGGTCATGTGCAACAAGGTGCCATTGGTTGTTGTGACTGACGGAGATGATTCAATCTGGGAGGCTGTTCGAAAAGTTTTTTCGGATGCAACCCATCAACTTTGTGCATGGCACATTGAGAAGAATGTTACATCTAACATCAAGGATGTGGCTTTACGCCAGCTATTCAATAGGTGGCTGTATGCAAACATGGGGTTCGAGGACTTTGAGACCGAGTGGGCCGAAGCATCGGCTGAGTATGGATTGAATGACACCTTGTGGGGGAACCAGGTGTACAGGAAGAGGGAGATGTAG	1260	0.4794	MYWRTQNQRIPSRLALRLALHRRRLTQVINVATVPGPQHRRFFLHHRRLTQVNLNMAIVNLKDVLYTRNDDGVDYGDVASLTDDDILRKAKIFCNREGVRHRKHYNRVDRRRPHKPETRTNREARMSIYLDRSNNIWRVKKVITKHNHALTHHGMVHLIPNFRSMTEAAKAQINGMQGCGISTSKTMQYLAGGYSLVGFLKKDAYNYVDRSRRARIADGDANSAIVYLEGKVDTDPMSMPRYNVIADDMLANLLWADGGSRIDYQYFDDVLAFDSTYKKNKYNRPLVIFSGYNNHKQTCIFEFGLVLDESIASYTWLLENFLEVMCNKVPLVVVTDGDDSIWEAVRKVFSDATHQLCAWHIEKNVTSNIKDVALRQLFNRWLYANMGFEDFETEWAEASAEYGLNDTLWGNQVYRKREM	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g01544	419	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	101	417	IPR031052	GO:0006355
	Aip01g01544	419	PANTHER	OS02G0262500 PROTEIN	101	417	-	-
	Aip01g01544	419	Pfam	MULE transposase domain	270	364	IPR018289	-
	Aip01g01544	419	Pfam	FAR1 DNA-binding domain	85	151	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g01544	Aip-Chr1	52849809	52852540	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Aip01g01544		MULE	4e-26	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g01544	-		-	adu:107493380	506.523