Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01504 ATGAACACCTTCTCCCACGTACCTCCAGGCTTTCGTTTTCATCCGACTGATGAAGAATTAGTTGACTACTACCTTAGGAAAAAGGTAGCATCCAAAAAGATTGATCTAGATGTCATCAAAGATGTTGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAACTATGCAAAATAGGAAGCGATGAAGAAAATGACTGGTATTTCTTCAGTCATAAAGATAAGAAGTACCCAACAGGAACAAGAACGAATAGGGCAACAAAAGCAGGGTTTTGGAAAGCCACGGGAAGAGATAAAGCAATATACTCAAAGCAGCATTGCCTTATTGGAATGAGAAAGACTCTTGTCTTCTACAAAGGAAGAGCTCCTAATGGCCACAAGTCTGACTGGATCATGCATGAGTATCGCCTTGAAACCAATGAAAATGGAACTGCTCCGGAAGAAGGGTGGGTTGTATGTAGAGTGTTCAAGAAGAAAATGGCAACAGTGAGGAAAATTGGAGACTATGATTCACCATGTTCTTGGTACGATGAACAAGTTCCCTTCATGCAAGATCTTGAATCCTCATCCCCAATAAAGCCACCAATAATTAACAACAACCATTATGCTTCTTCATACAACTACCACCAGTTACAATTACCCTGCAAACCGGAATTCCATCAACTTATGCAATACAACAACATGAACATGCCACGTCACGACGACGCTGCTGATAATAACAACAACTTCCTCCAACTTCCTCAGCTTGAAAGCCCTAATGGTGGAATTAGCCCCTTCTTGCAACAACAAGATCATCATCATCAGCTATTGCAACAACAAAATTCCAACAGCAATTATCATCTTGATCAAGTAACCGATTGGCGAGTTCTCGATAAATTCGTTGCGTCGCAGCTCATGAGTCATGGTCATGATGATAATGATGACGATGGCCACAACAATAATAATAATGTTTCCAAAGAAGTAATAAACAGTTATTCTGATGCTTCAATTCTCCATGTGGCTCAACAGATTGCTATGCTGGCAAATGGATCGTCATCTTCATCATCATCAAGGAGGCCTCAAATTTCTCATCAGGAATATGCTGCTTCAACTTCCACATCAAGTTCTCAGATTGATCTCTGGAAGTCATCGTCATGA 1134 0.4048 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKKIDLDVIKDVDLYKIEPWDLQELCKIGSDEENDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSKQHCLIGMRKTLVFYKGRAPNGHKSDWIMHEYRLETNENGTAPEEGWVVCRVFKKKMATVRKIGDYDSPCSWYDEQVPFMQDLESSSPIKPPIINNNHYASSYNYHQLQLPCKPEFHQLMQYNNMNMPRHDDAADNNNNFLQLPQLESPNGGISPFLQQQDHHHQLLQQQNSNSNYHLDQVTDWRVLDKFVASQLMSHGHDDNDDDGHNNNNNVSKEVINSYSDASILHVAQQIAMLANGSSSSSSSRRPQISHQEYAASTSTSSSQIDLWKSSS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01504 377 SUPERFAMILY NAC domain 5 157 IPR036093 GO:0003677|GO:0006355
Aip01g01504 377 Pfam No apical meristem (NAM) protein 8 136 IPR003441 GO:0003677|GO:0006355
Aip01g01504 377 PANTHER NAC DOMAIN-CONTAINING PROTEIN 7-LIKE 4 326 - -
Aip01g01504 377 MobiDBLite consensus disorder prediction 342 377 - -
Aip01g01504 377 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Aip01g01504 377 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Aip01g01504 377 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01504 Aip-Chr1 50522722 50525378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01504 1 374 NAC Transcription Factor Family AT1G12260 54.453 3.18e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip01g01504 NAM 3.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01504 - - aip:107606832 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01504 01 50522722 50525378 Aip01g01504 01 50522722 50525378 ECH
Aip05g01760 05 36241273 36243996 Aip01g01504 01 50522722 50525378 PCT