Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01498 ATGTCATCATCCTCCTCCTCTTCTTCTTCTTCAACTACATTATCACTGGACCACATCCCTCCTTCCGAACAGCTTTGTTATGTTCACTGCAACATTTGTGACACTGTCCTTGCTGTGAGTGTTCCCTGCACAAGCTTGTTCAAGACGGTCACGGTGCGATGCGGCCATTGCACCAATCTGCTGCCGGAGGAGATTCCGAATCCATCCCCAAATTTCTTCATGAACCAGACAAACACACCAAATGAATTCTCCATGCCTACTAGGACTGTTGTTGATGAGCTTCCACGCCCACCTATCATAAACAGACCTCCTGAGAAGAGACAGAGAGTCCCATCCGCTTACAACCGCTTCATTAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATAACCCACAGAGAGGCCTTCAGTGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTGTGAAGAAGACAAACGTGCGCCAGCAGGAAGGAGAAGAGGTCCTGATGAAAGATGCTGGGTTTTATGCTTCGGCTAATGTTGGTGTTTCACCCTACTGA 579 0.4836 MSSSSSSSSSSTTLSLDHIPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPEEIPNPSPNFFMNQTNTPNEFSMPTRTVVDELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNVRQQEGEEVLMKDAGFYASANVGVSPY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01498 192 PANTHER PROTEIN YABBY 4 63 190 - -
Aip01g01498 192 PANTHER PROTEIN YABBY 4 8 61 - -
Aip01g01498 192 Pfam YABBY protein 21 63 IPR006780 GO:0007275
Aip01g01498 192 Pfam YABBY protein 92 155 IPR006780 GO:0007275
Aip01g01498 192 Gene3D High mobility group box domain 100 178 IPR036910 -
Aip01g01498 192 SUPERFAMILY HMG-box 99 148 IPR036910 -
Aip01g01498 192 PANTHER PROTEIN YABBY 6-RELATED 63 190 IPR006780 GO:0007275
Aip01g01498 192 PANTHER PROTEIN YABBY 6-RELATED 8 61 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01498 Aip-Chr1 50314410 50317254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01498 17 156 C2C2-YABBY Transcription Factor Family AT2G26580 56.579 3.35e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Aip01g01498 YABBY 6.6e-38 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01498 K25796 - gmx:100798441 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g01498 01 50314410 50317254 Aip01g01498 01 50314410 50317254 ECH