Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01419 ATGGAGAGACAGAAATGCTGCAAGCTCTGCTCAAGAACCTTCCCTAATGGAAGAGCCCTAGGTGGCCACATGAAGGCTCACTTGGCCACTTTTCCTCTCCCCCCTAAACCCCCTCAACCACCAGCACCACCATTACCTTCTTCTGAATCCTCCTCTTCATTTTCCTCCTTCTCAGAATCAGAACCCGAAGACAAGGCTGCTTTGGTTTATGGGTTGAGGGAGAATCCCAAGAAGAGTTTCAGAGTCGCAGATCCCGAGTTCTCTCCCTTGGCTGCACCACTTCTACCGCCACCTGACTCTGTTGCGGTTCAAGACAGAGAGAGCGAGACAGAGTCATCAAAGAAACCAACTCGCCAACGATCCAAGCGAACTTGGAGAGCAAGGTCCATTCTTCACAACCATGAAGACGATAAAGAACAGCTTAAGAAGAAGCAGCCCAAGCTTGGATTTATGGAACATGAACATGAATATGAAGCAGAACCGGTGAGCTCCGTCTCGGAAACTTCAGTAGTGGAAGACGTCGCCATGTTCCTGGTTATGCTCTCAAGGGACACGTGGTCCAACAAAGATGCAATACTAGTAAAACAAGAAGGAGAAGTTGAAAGATCAAAGGCTGGGAGCGGCAATGGGATCAAGATGAAGAAGGTTCGTGTTCGCGGGAAGCATAGTCGTCAGTGTGAGAATTGCGGTAAAACTTTTCGATCTTCGAGGGCGTTGGGAAGTCATAGGAGCATATGCTGTGACGGAGGAAGATCAGGAGCAAGTGATAGAATCTTCCAATGCCCTTTTTGTTTCAAAATCTTTGGCTCTGGCCAAGCCCTTGGCGGTCACAAGAGATCTCATCTCATCGCCATGGCGGCACCTTCCTCCTCTTCTTCCACTGCCAAGAATTTCATAGATCTCAACTTGCCTGCTCCACTAGAAGAACAACATGAAGATGATCTTGGTGTTGTTTCGGATGTTTCCTATGCTTGA 975 0.4831 MERQKCCKLCSRTFPNGRALGGHMKAHLATFPLPPKPPQPPAPPLPSSESSSSFSSFSESEPEDKAALVYGLRENPKKSFRVADPEFSPLAAPLLPPPDSVAVQDRESETESSKKPTRQRSKRTWRARSILHNHEDDKEQLKKKQPKLGFMEHEHEYEAEPVSSVSETSVVEDVAMFLVMLSRDTWSNKDAILVKQEGEVERSKAGSGNGIKMKKVRVRGKHSRQCENCGKTFRSSRALGSHRSICCDGGRSGASDRIFQCPFCFKIFGSGQALGGHKRSHLIAMAAPSSSSSTAKNFIDLNLPAPLEEQHEDDLGVVSDVSYA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01419 324 SUPERFAMILY beta-beta-alpha zinc fingers 6 243 IPR036236 -
Aip01g01419 324 MobiDBLite consensus disorder prediction 104 118 - -
Aip01g01419 324 MobiDBLite consensus disorder prediction 28 67 - -
Aip01g01419 324 MobiDBLite consensus disorder prediction 31 47 - -
Aip01g01419 324 Gene3D Classic Zinc Finger 193 286 - -
Aip01g01419 324 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 320 IPR044303 GO:0006355
Aip01g01419 324 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 320 - -
Aip01g01419 324 ProSitePatterns Zinc finger C2H2 type domain signature. 6 27 IPR013087 -
Aip01g01419 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Aip01g01419 324 SMART c2h2final6 224 244 IPR013087 -
Aip01g01419 324 SMART c2h2final6 259 281 IPR013087 -
Aip01g01419 324 SMART c2h2final6 5 27 IPR013087 -
Aip01g01419 324 MobiDBLite consensus disorder prediction 88 128 - -
Aip01g01419 324 Pfam C2H2-type zinc finger 259 282 - -
Aip01g01419 324 Pfam C2H2-type zinc finger 226 243 - -
Aip01g01419 324 Pfam C2H2-type zinc finger 6 29 - -
Aip01g01419 324 ProSitePatterns Zinc finger C2H2 type domain signature. 261 281 IPR013087 -
Aip01g01419 324 SUPERFAMILY beta-beta-alpha zinc fingers 220 281 IPR036236 -
Aip01g01419 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 252 IPR013087 -
Aip01g01419 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 281 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01419 Aip-Chr1 44262398 44263620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01419 1 310 C2H2 Transcription Factor Family AT1G02030 34.337 5.28e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip01g01419 zf-C2H2_6 6.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01419 - - adu:107486002 582.408