Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01393 ATGGGTGCTTATAAGTATGTTTCGGAGCTCTGGCGCAAGAAGCAATCGGATGTAATGAGATTCTTGCAGAGGGTAAGGTGCTGGGAGTATCGTCAGCAGCCTTCCATTGTCCGTGTCACTAGGCCAACCCGCCCCGACAAGGCTCGTCGCTTGGGTTACAAGGCCAAACAGGGATATGTGGTCTACCGTGTTCGTGTGCGAAGGGGTGGCCGCAAGAGACCTGTTCCCAAGGGTATTGTTTATGGCAAGCCCACGAACCAGGGTGTTACTCAACTGAAATTTCAGCGAAGCAAGAGGTCTGTTGCTGAGGAGAGGGCTGGACGGAAGCTAGGTGGCCTCAGGGTCCTCAATTCTTACTGGGTGAATGAGGACTCGACATACAAATACTTTGAGATCATTATGGTGGATGTTGCGCACACAGCTATTAGAAATGATCCAAGGATCAATTGGCTCTGCAATCCAGTCCATAAACACAGGGAACTTCGCGGCCTCACCTCTGCTGGGAAGTCTAACAGGGGTTTACGTGGCAAGGGACATCTTTACCACAAAAATCGTCCTTCCCGCAGGGCAACCTGGAAGAGAAACAATACCCTTTCCCTCCGCCGTTACCGTTGA 615 0.5138 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIMVDVAHTAIRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGKGHLYHKNRPSRRATWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01393 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Aip01g01393 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Aip01g01393 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Aip01g01393 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Aip01g01393 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Aip01g01393 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Aip01g01393 204 MobiDBLite consensus disorder prediction 164 187 - -
Aip01g01393 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01393 Aip-Chr1 43373770 43375999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01393 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.667 5.66e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01393 K02877 - gmx:100810310 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g01043 05 15035029 15037416 Aip01g01393 01 43373770 43375999 PCT