Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01391 ATGGCTCCAAAGAATAATAAAAAGTCAACTAAGATATCATCAGTGATGATGAATAGAGGGGCATGGACCCCAGAAGAAGATGATAAACTAGCTCGGTTCATTGAAATTCATGGTGCAAAGAGGTGGAAGACTCTTGCAGTCAAATCAGGTCTAAAAAGATGCGGAAAAAGTTGCAGGCTGAGATGGTTAAACTATCTTAGACCCAATATCAAGAGGGGAAACATAACAATTGAAGAAGAAGACTTGATTCTTAGGCTTCACAAACTTCTAGGAAACAGATGGTCTCTGATAGCTGGGAGGCTTCCAGGGCGAACAGATAATGAAATAAAGAACCACTGGAATTCTCATTTGTGCAAAAAAGTAAATCCCAATGCAGGAGAACCATCAACTTCAACAGCAAAAGAAAGTGGTGCCACACTCAATAATATGGAGGACAGTAAAATAATGTTAGAGCATAATAGAGCCACTAATAATGGGAGTGACGAAAATTTAGATATTAACTTCGATGTGAACGAATTTTTTGATTTCTCTACTGAAGGATCCTTTGGTTTTGATTGGGCAAACAAGTACTTAGAATTTGACGAGTCATGA 591 0.3807 MAPKNNKKSTKISSVMMNRGAWTPEEDDKLARFIEIHGAKRWKTLAVKSGLKRCGKSCRLRWLNYLRPNIKRGNITIEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNHWNSHLCKKVNPNAGEPSTSTAKESGATLNNMEDSKIMLEHNRATNNGSDENLDINFDVNEFFDFSTEGSFGFDWANKYLEFDES 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01391 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 66 IPR017930 -
Aip01g01391 196 CDD SANT 78 117 IPR001005 -
Aip01g01391 196 Gene3D - 11 72 - -
Aip01g01391 196 SMART sant 71 119 IPR001005 -
Aip01g01391 196 SMART sant 18 68 IPR001005 -
Aip01g01391 196 SUPERFAMILY Homeodomain-like 18 113 IPR009057 -
Aip01g01391 196 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 195 - -
Aip01g01391 196 Gene3D - 75 149 - -
Aip01g01391 196 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 7 195 - -
Aip01g01391 196 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Aip01g01391 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Aip01g01391 196 CDD SANT 21 66 IPR001005 -
Aip01g01391 196 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Aip01g01391 196 Pfam Myb-like DNA-binding domain 72 117 IPR001005 -
Aip01g01391 196 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01391 Aip-Chr1 43351620 43353067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01391 6 193 MYB Transcription Factor Family AT3G13540 48.241 2.24e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g01391 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01391 K09422 - gmx:100799575 265.774