Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip01g01384 | ATGACGCGACGATGCTCCCATTGCAGCCACAATGGGCATAACTCGAGGACATGCCCGAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACGCCGGTTCCGGGTCCGGTTCAGGACCTATCCACGCTTCTGGGTCCAATAACCCCGGTTCGCCCGGGGATAACCACGATAACGCGGCTACCGCTGACGGTTATGCTTCCGAGGACTTCGTTCCTGGCTCCTCTTCTAGCTCCCGTGAAAGAAAGAAGGGGGTTCCATGGACTGAGGAGGAGCATAGAATGTTTTTACTTGGATTACAAAAGTTGGGCAAAGGTGATTGGCGTGGAATCGCAAGGAACTATGTTATATCAAGGACCCCTACTCAAGTGGCCAGTCACGCTCAAAAGTATTTCATCAGGCAAAGCAATGTGTCTAGACGGAAAAGACGCTCCAGCTTGTTTGACATTGTTGCAGATGAAGCAGCTGATGATACTCCAATGGTACAGCAAGACTTCTTATCAGCTAACCAGTTACAGGCTGAAACAGAAGGCAATAACCCCTTGCCTGCGGTTCCCACCCTCGACGAAGAATGTGAATCCATGGATTCCACCAACTCCAATGATGGAGATTCTGCGCCATTAAAGCCTGAAAACTCTCAACCACCACAACAGCAGTCATCTTATCCGGTGCTGTATCCTGCATACTATTCTCCTTTCTTCCCATTTCCTCTGCCCTATTGGTCAGGGTACAGTCCAGAGCCTAATACTGTGAAGGAGGAGACACACGAGGTGCTGAAGCCAACTGCAGTGCATTCCAAAGCACCAATAAACGTTGACGAACTCGTTGGCATGTCAAAACTGAGCTTGGGAGAGACTATTGCAGACTCAGGCCCGTCCTCTCTGTCCCTGAAGCTTCAAGAAGAAGGGCCATCTCGGCAGTCAGCGTTTCATGCGACCCCAACATGTGGCAGTTCGAATATGAATGAGAGTGCTATCCATGCAGTTTGA | 1074 | 0.4497 | MTRRCSHCSHNGHNSRTCPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAGSGSGSGPIHASGSNNPGSPGDNHDNAATADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEAADDTPMVQQDFLSANQLQAETEGNNPLPAVPTLDEECESMDSTNSNDGDSAPLKPENSQPPQQQSSYPVLYPAYYSPFFPFPLPYWSGYSPEPNTVKEETHEVLKPTAVHSKAPINVDELVGMSKLSLGETIADSGPSSLSLKLQEEGPSRQSAFHATPTCGSSNMNESAIHAV | 357 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip01g01384 | 357 | MobiDBLite | consensus disorder prediction | 68 | 84 | - | - | |
| Aip01g01384 | 357 | Gene3D | - | 114 | 166 | - | - | |
| Aip01g01384 | 357 | MobiDBLite | consensus disorder prediction | 335 | 357 | - | - | |
| Aip01g01384 | 357 | SUPERFAMILY | Homeodomain-like | 110 | 165 | IPR009057 | - | |
| Aip01g01384 | 357 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 111 | 163 | IPR006447 | GO:0003677 | |
| Aip01g01384 | 357 | MobiDBLite | consensus disorder prediction | 220 | 250 | - | - | |
| Aip01g01384 | 357 | Pfam | Myb-like DNA-binding domain | 115 | 160 | IPR001005 | - | |
| Aip01g01384 | 357 | CDD | SANT | 115 | 160 | IPR001005 | - | |
| Aip01g01384 | 357 | PANTHER | BNAC01G21010D PROTEIN | 68 | 350 | - | - | |
| Aip01g01384 | 357 | PANTHER | BNAC01G21010D PROTEIN | 1 | 21 | - | - | |
| Aip01g01384 | 357 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 68 | 350 | - | - | |
| Aip01g01384 | 357 | MobiDBLite | consensus disorder prediction | 54 | 114 | - | - | |
| Aip01g01384 | 357 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 108 | 164 | IPR017930 | - | |
| Aip01g01384 | 357 | MobiDBLite | consensus disorder prediction | 201 | 250 | - | - | |
| Aip01g01384 | 357 | ProSiteProfiles | Myb-like domain profile. | 108 | 160 | IPR001005 | - | |
| Aip01g01384 | 357 | ProSiteProfiles | SANT domain profile. | 116 | 164 | IPR017884 | - | |
| Aip01g01384 | 357 | SMART | sant | 112 | 162 | IPR001005 | - | |
| Aip01g01384 | 357 | PANTHER | TRANSCRIPTION FACTOR KUA1 | 1 | 21 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip01g01384 | Aip-Chr1 | 42529329 | 42534796 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Aip01g01384 | Myb_DNA-binding | 1.3e-10 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip01g01384 | - | - | ccaj:109807943 | 510.76 |