Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01373 ATGGCGAACCAAGCTGAAATCTCGGCCCTTAACCGCATCAAGCTGCATCTCTTGGGTGAACTCTCACCGCTCGGGACACCAGAGTTCACTAAAAGCAAACTCTGGCTTCAAATAGACGAACCCTCCACAGACCCTAATTTCTCTTTTCATCAATCAGAATGCCAATCTCAATCTCAATCTGAATTTTCCCCTACCGACTCCTCAATTTCTCTCAACCACTACTTCACCGATCTTCCCCTCTTTGAATTCGATTCAAAGCCTCAAGTGATCGACCTTGAATCCGACCTCGAAGCACCCAAAACCCTGCCTCAAAGCAATCCCCAAATCGAGATGAACAAGGCTCATCGCCTCAACCGGAAACCGTCGCTGCAAATCTCGCTCCCGAAGAAGAAAACCGAATGGATTCAGTTCGGAAACCCGGATCCGAAACCCGAGGCGGTGGAACCGTTCGTTCAGCAGCAACAACAACAACAACAACCGGAGCCAGAGAAGAAGCACTACAGAGGCGTTCGCCAAAGGCCGTGGGGAAAATTCGCCGCGGAGATTCGTGACCCGAACAAACGAGGGTCCAGAGTGTGGCTTGGAACCTTCGACACCGCCATCGAAGCCGCCAAGGCCTACGACCGCGCTGCCTTCAAGCTCCGAGGATCCAAGGCGATCTTGAACTTCCCTCTCGAGGTTGAATCCATGGCCACCTCTGCTTCTGCTTCCACCTCCGGCGATGGCGGTGATAGGAAGCGCCGCCGCGAAGAAGAGGAAGTGGCGCCGATGACGAAGGAGGTGGAGGAAGAAGTTGTTGAGGTGGTTATGCCGGTGGTGAAGAAGGAGAAGACGACGACTTTTGAATCGGAGGTTAACTGTATAAGGGAGCTTCCGTTAACGCCGTCAATTTGGACGGGGTTCTGGGACAGTGATGTGAAGGGAACAGGAATGGGAATATTTAGCGTGCCGCCGTTGTCACCGTTATCTTCTCCCCTTGCTGTTATGGTTGTGTGA 996 0.5261 MANQAEISALNRIKLHLLGELSPLGTPEFTKSKLWLQIDEPSTDPNFSFHQSECQSQSQSEFSPTDSSISLNHYFTDLPLFEFDSKPQVIDLESDLEAPKTLPQSNPQIEMNKAHRLNRKPSLQISLPKKKTEWIQFGNPDPKPEAVEPFVQQQQQQQQPEPEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAAKAYDRAAFKLRGSKAILNFPLEVESMATSASASTSGDGGDRKRRREEEEVAPMTKEVEEEVVEVVMPVVKKEKTTTFESEVNCIRELPLTPSIWTGFWDSDVKGTGMGIFSVPPLSPLSSPLAVMVV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01373 331 MobiDBLite consensus disorder prediction 138 170 - -
Aip01g01373 331 SMART rav1_2 166 230 IPR001471 GO:0003700|GO:0006355
Aip01g01373 331 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Aip01g01373 331 PRINTS Ethylene responsive element binding protein signature 206 226 IPR001471 GO:0003700|GO:0006355
Aip01g01373 331 MobiDBLite consensus disorder prediction 241 259 - -
Aip01g01373 331 Gene3D AP2/ERF domain 165 226 IPR036955 GO:0003700|GO:0006355
Aip01g01373 331 Pfam AP2 domain 166 216 IPR001471 GO:0003700|GO:0006355
Aip01g01373 331 SUPERFAMILY DNA-binding domain 166 226 IPR016177 GO:0003677
Aip01g01373 331 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 316 - -
Aip01g01373 331 MobiDBLite consensus disorder prediction 231 259 - -
Aip01g01373 331 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 316 - -
Aip01g01373 331 CDD AP2 165 224 IPR001471 GO:0003700|GO:0006355
Aip01g01373 331 ProSiteProfiles AP2/ERF domain profile. 166 224 IPR001471 GO:0003700|GO:0006355
Aip01g01373 331 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01373 Aip-Chr1 41738303 41739677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01373 1 323 AP2-EREBP Transcription Factor Family AT5G47230 43.582 5.54e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip01g01373 AP2 4.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01373 K09286 - gmx:100816039 309.686