Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01352 ATGCAATTCCAACTAGATCGTAGCTTCCCTCCACATGTTAAGCTCACACCTCATGCTTTATGCCTACACAAAGAAGAAATGGATATCCACAAATGTCTCATTAACCGTGTAGACATTGTTCATAGGATTGCAAGGCTTCTGATGCTTGCTGGTATGGAAAAATTGCCACTTTATCATCGAAGATCCATTATTCGAAAGGTTGTCTTGATTAGGAAGCATCCATTAATGGGTATGAGATTGAGGATCGCTCAAAAGAGAGGAAGAAGGAGGTCGCCGGCGTTGATGGTGGCTGACGGAGGCGCGGCTGTGCGGCGGAGATGGAGGCAGGGGCCGAGGAAGAAGAATGGAAGGGAAAAAGGACGAAGGAAGAAGAAAaaggcagagaaatttgaaagattgggggagGTAGGGTCAATGTGTACTGGTGGTCCACATCATCAATCCAATCCTAAATCATATTATTCCTATGGTCCCAATTGGGCTCACACCACTGATATGGAGCTTAAGCACCAACTTGGTCTTCTTTGCGTTATACTGCTTTTACCAGCACTAAGCAGTGCCACTAATAAAGACTACTGCCCTCCTTATAAGAACTCTAGAGCAACCTATTATGGTACCCGTGATGGTTATGGCACTCCAAGGGGAGCATGTGGATTTGGCGAATACGGAAGGACGGTGAATGATGGCATGGTTGCAGCTGTATCTGGGCTATGGAATGATGGACGTGGCTGCGGTGCATGCTATCAGGTTAAATGTAAAGTACCAAAATTGTGCAATGTCAACGGGGTAACAGTGGTGGCAACAGATTATGGTCAGGGAGACAGAACAGACTTCATATTGAGCCCACGAGCCTTTAATAGTTTGGGTGTGAACCCTGATGCATCTAAAGAGCTAAAAAAATACGGTACTCTTGATATTGCATACAAAAGAGTCCCTTGCACATACCCTGGCCGCAACATTGTTGTTAAGGTTCAAGAAAGTAGCAGCAACCCTGGATACTTTGCTGTGGTTCTTCAAAACCTTGGTGGATCATACGATGTCACTAATGTTGAATTGTGGGAGGATTCACGCAAACAATGGAGTCCATTGCGTAGGGTTTATGGGGCAGTGTTTGACTATGCTAACCCACCAAAGGGTCAACTCTTCTTGAGGTTCCAAGTGATTGGTTGTTACGGAACTTATTGGCAAATACCAAAGAAACCTATCCCTGCTGATTGGAAGCCCAAAATGACCTATGACACTGGACTTCAGCTTAAATAA 1260 0.4389 MQFQLDRSFPPHVKLTPHALCLHKEEMDIHKCLINRVDIVHRIARLLMLAGMEKLPLYHRRSIIRKVVLIRKHPLMGMRLRIAQKRGRRRSPALMVADGGAAVRRRWRQGPRKKNGREKGRRKKKKAEKFERLGEVGSMCTGGPHHQSNPKSYYSYGPNWAHTTDMELKHQLGLLCVILLLPALSSATNKDYCPPYKNSRATYYGTRDGYGTPRGACGFGEYGRTVNDGMVAAVSGLWNDGRGCGACYQVKCKVPKLCNVNGVTVVATDYGQGDRTDFILSPRAFNSLGVNPDASKELKKYGTLDIAYKRVPCTYPGRNIVVKVQESSSNPGYFAVVLQNLGGSYDVTNVELWEDSRKQWSPLRRVYGAVFDYANPPKGQLFLRFQVIGCYGTYWQIPKKPIPADWKPKMTYDTGLQLK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01352 419 SUPERFAMILY PHL pollen allergen 318 413 IPR036749 -
Aip01g01352 419 Gene3D - 314 414 IPR036749 -
Aip01g01352 419 Gene3D - 182 313 IPR036908 -
Aip01g01352 419 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 214 318 IPR007112 -
Aip01g01352 419 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 332 414 IPR007117 -
Aip01g01352 419 PRINTS Expansin/Lol pI family signature 234 252 IPR007118 GO:0005576
Aip01g01352 419 PRINTS Expansin/Lol pI family signature 195 210 IPR007118 GO:0005576
Aip01g01352 419 PRINTS Expansin/Lol pI family signature 301 317 IPR007118 GO:0005576
Aip01g01352 419 PRINTS Expansin/Lol pI family signature 400 414 IPR007118 GO:0005576
Aip01g01352 419 PANTHER EXPANSIN-B3 167 418 - -
Aip01g01352 419 Pfam Lytic transglycolase 235 291 IPR009009 -
Aip01g01352 419 MobiDBLite consensus disorder prediction 105 128 - -
Aip01g01352 419 MobiDBLite consensus disorder prediction 106 127 - -
Aip01g01352 419 SUPERFAMILY Barwin-like endoglucanases 192 317 IPR036908 -
Aip01g01352 419 PANTHER EXPANSIN-B1-LIKE PROTEIN 167 418 - -
Aip01g01352 419 Pfam Expansin C-terminal domain 320 390 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01352 Aip-Chr1 40541879 40546828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01352 166 418 Expansin Gene Family AT4G17030 47.656 4.63e-78 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01352 - - adu:107485050 547.354