Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01351 ATGGAGCTTAATAATTTGAAGCGCCAGATCGGAATTTTTTGTGTTCTATTGATCTTACCAGCACTATGCAGTGCTGCGTTTACAAAATCCAGAGCAACATTTTATAGTACCTCTGATGGTTTAGGGACTCCAACTGGACGCTGTGGGTACGGCGACTATGGAAGGACGGTCCACGGAGGAAGTGTCGCCGGTGTGTCAAACCTCTGGAGAGATGGAGTGAGGTGCACAAACCCATCGCTGTGCAACAGTAATGGAGCATACTTGGTGGTAACAGACTACGGTGCAGGAGATAGAACAGATTTCATAATGAGCCCAGCGGCCTTCTCAAGTTTGGGAGTCAACTCAACAGCAAATGATGAACTCAGGAAACTAGGCACCGTTGATATTGAATACCAGAGGATTTCATGCAGTTACCCTGGCCAAAACATTGCGATCAAAATTAAAGAGAGTAGCACCAACCCTGGTTACTTGTCTATTGTACTTTTCAATGTTGGTGGAACATGCGATGTCATTGCTATTCAGTTGTCGCAGTCGGGCAGCAACACATGGCTTTCTTTGCAGAGGGTGGACGGTGCAGTTTTTCAGATTTCAAACCCGCCAAGTGGGACCCTCAGATTCAGATTCCAAGTTAATTGCGGTTCTGGACTTCAATGGAGGCTCCCCAAGAATGACATCCCTGCTAACTGGAGGGCTGGTGCCACTTATGACACTGGCATTCAGTTTTAA 726 0.4669 MELNNLKRQIGIFCVLLILPALCSAAFTKSRATFYSTSDGLGTPTGRCGYGDYGRTVHGGSVAGVSNLWRDGVRCTNPSLCNSNGAYLVVTDYGAGDRTDFIMSPAAFSSLGVNSTANDELRKLGTVDIEYQRISCSYPGQNIAIKIKESSTNPGYLSIVLFNVGGTCDVIAIQLSQSGSNTWLSLQRVDGAVFQISNPPSGTLRFRFQVNCGSGLQWRLPKNDIPANWRAGATYDTGIQF 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01351 241 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 141 IPR007112 -
Aip01g01351 241 Gene3D - 21 137 IPR036908 -
Aip01g01351 241 PANTHER EXPANSIN-B3 5 240 - -
Aip01g01351 241 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Aip01g01351 241 PRINTS Expansin/Lol pI family signature 124 140 IPR007118 GO:0005576
Aip01g01351 241 PRINTS Expansin/Lol pI family signature 183 197 IPR007118 GO:0005576
Aip01g01351 241 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Aip01g01351 241 Pfam Expansin C-terminal domain 143 223 IPR007117 -
Aip01g01351 241 Gene3D - 138 241 IPR036749 -
Aip01g01351 241 SUPERFAMILY Barwin-like endoglucanases 13 140 IPR036908 -
Aip01g01351 241 PANTHER EXPANSIN-B1-LIKE PROTEIN 5 240 - -
Aip01g01351 241 SUPERFAMILY PHL pollen allergen 142 236 IPR036749 -
Aip01g01351 241 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 155 237 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01351 Aip-Chr1 40523356 40525471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01351 15 239 Expansin Gene Family AT4G17030 45.532 5.23e-68 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01351 - - gmx:100779487 271.166