Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01348 ATGTCGCGAACGCTGGTGCAGCCTATAGGGCAGAAGAGGCTAACCAACGTGGCCGTCGTGCGACTCAAGAAGCACGGCATGCGCTTTGAGATTGCCTGCTACCCTAATACCGTCCTCGCTCGGCGTTCCGGCGTGGAGAAGGACCTGGACGAAGTGTTGCAGTCACATACTGTTTATTCCAATGTTTCCAAAGGAGTTCTTGCCAAGTCAAAGGATTTGATTGCTGCTTTTGGGACTGATGATCAGACCAAGATATGCTTAGAGGTTTTGAAGAAAGGGGAACTTCAGGTTGCCGGGAAAGAAAGGGAATCCTTGCTGTCGAGTCAGTTCAGAGATATTGCCACCATTGTGATGCAAAAGACATACAATCCTGAGACGCAGCGCCCTTACACTATTAGCATGATTGAGCGTCTCATGAGGGATATTCATTTTGCTGTTGATCCAAATAGTAGTTCCAAGAAGCAGGCTTTGGAGTTGATTCAGGAGCTTCAAAAGCACTACCCTATAAAACGATGTCCATTAAGAATCCGAGTTGCTGCTCATGAGGAGGAAGTGCCTGCCCTTTTAGAGAAGCTGAATGAGTGGAAGTCTACCATTATTTCTAAAGAAGGATCTTCTGGTCAGCTATCTGTTATCTTTGAATTAGAACCTGGTCTATATAAGGATTGTCATGACTTCGTTGTGAACGTGCATGGAAGATTTGAGGTTCTTACACACTCTCTTTATGTGGATGGGGATACCCAAGTAGAACAATACAACGATGATTATGAGGAAATGCCTCCACCGTTGGCCAAAGAAACTCGCGAACATGTGCTTGAATTGAATGATAAACTTCAAAAGCAAACAATTTCATCTACGAGTAGGCCGCCTCCTGAGATGCAACAACAAAAGGCAAACAAGTGCAGCACATGCAATGTTTCTTTTGAGGACTCTAAGCAGTACCGAGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGCAAGACAAGGCAACTCCCACCCCTTACTGAGGAAGAGTGCTTGGCAGACATGGAACTGGGTGACTCAAAATCTGATTTGAAGGATTATTCATTTTGA 1083 0.4515 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLARRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDQTKICLEVLKKGELQVAGKERESLLSSQFRDIATIVMQKTYNPETQRPYTISMIERLMRDIHFAVDPNSSSKKQALELIQELQKHYPIKRCPLRIRVAAHEEEVPALLEKLNEWKSTIISKEGSSGQLSVIFELEPGLYKDCHDFVVNVHGRFEVLTHSLYVDGDTQVEQYNDDYEEMPPPLAKETREHVLELNDKLQKQTISSTSRPPPEMQQQKANKCSTCNVSFEDSKQYREHHKSEWHKHNMKRKTRQLPPLTEEECLADMELGDSKSDLKDYSF 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01348 360 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Aip01g01348 360 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Aip01g01348 360 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Aip01g01348 360 Coils Coil 178 198 - -
Aip01g01348 360 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 230 IPR002140 GO:0042256
Aip01g01348 360 Gene3D - 1 96 IPR036786 -
Aip01g01348 360 PANTHER BNAANNG06530D PROTEIN 1 360 - -
Aip01g01348 360 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Aip01g01348 360 Gene3D - 174 250 - -
Aip01g01348 360 Gene3D - 100 172 IPR037188 -
Aip01g01348 360 SUPERFAMILY beta-beta-alpha zinc fingers 291 346 IPR036236 -
Aip01g01348 360 MobiDBLite consensus disorder prediction 345 360 - -
Aip01g01348 360 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Aip01g01348 360 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 360 IPR039100 -
Aip01g01348 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 299 330 IPR013087 -
Aip01g01348 360 ProSitePatterns Zinc finger C2H2 type domain signature. 301 323 IPR013087 -
Aip01g01348 360 Gene3D Classic Zinc Finger 290 348 - -
Aip01g01348 360 MobiDBLite consensus disorder prediction 315 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01348 Aip-Chr1 40267916 40270368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01348 27 360 C2H2 Transcription Factor Family AT1G43860 57.971 2.67e-142 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip01g01348 SBDS_C 1.5e-28 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01348 K14574 - gmx:100797497 616.305