Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01329 ATGAAAGAAAACTCACTCACAACTCATTCATCTGCGTCGTTTCTCTCAAGTCTCACTTTCTCCATGTTCTGCCGCAGTCGCTGTTTCCCGTCGAGCTGCCGTTGTTCGCCTGCGTCTGCTACCTCTGCTCTGATTTGCGCCATTGTCTTTGTGAATTTTACCTATGTTGCCCTCTGCTTTGTATTTCTTTGCATCTCCACTATTCACAACTCCATCATACTATCACCGTTCACGAGTTCGACTACTTCTCCTATAGTCCTATCTCTGCTCTGGTCTAGGCTATGGAGGAATGGAACTGGCTGTGGTGCATGCTACCAGGCAAGGTGCAAATTAGAGCAATACTGCGACGAGGAGGGAACCTACGTGGTGGTAACAGACTACGGCGAAGGAGACAGAACAGACTTCATTTTGAGCCCACGCGCCTACAAGAAGTTGGGACGAAACGATGAAGCTGCAGCAGAGCTATTCAAATATGGTGTGGTTGACATTGAATACCGAAGGGTCCCTTGCAGATATGAAGGCTACAACATTGTCTTTAAGGTCCATGAACGAAGCAAGAATCCTGAATACTTTGCTGTTGTCATTCTCTATGTTAATGGTGCTTATGATGTAACTGCTGTTCAGTTGTGGCAGGAAGATTGCCAAGAATGGACAGAAATGAGGAGGGTTTATGGGGCAGTGTTTGATTATGCCAACCCACCAAGTGGTGAAATCAATTTGAGGTTCCAAGTGAGTGGCAGTGCAGGTATCTATTGGGTGCAATCCCAGAATGCTATTCCTAGTGATTGGACTGCTGGAGCTGCTTATGATTCACAGGTTCAGCTTACTTAA 831 0.4621 MKENSLTTHSSASFLSSLTFSMFCRSRCFPSSCRCSPASATSALICAIVFVNFTYVALCFVFLCISTIHNSIILSPFTSSTTSPIVLSLLWSRLWRNGTGCGACYQARCKLEQYCDEEGTYVVVTDYGEGDRTDFILSPRAYKKLGRNDEAAAELFKYGVVDIEYRRVPCRYEGYNIVFKVHERSKNPEYFAVVILYVNGAYDVTAVQLWQEDCQEWTEMRRVYGAVFDYANPPSGEINLRFQVSGSAGIYWVQSQNAIPSDWTAGAAYDSQVQLT 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01329 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 94 175 IPR007112 -
Aip01g01329 276 SUPERFAMILY PHL pollen allergen 176 271 IPR036749 -
Aip01g01329 276 Gene3D - 171 272 IPR036749 -
Aip01g01329 276 Pfam Lytic transglycolase 93 165 IPR009009 -
Aip01g01329 276 Gene3D - 79 170 IPR036908 -
Aip01g01329 276 PANTHER EXPANSIN-B3 92 275 - -
Aip01g01329 276 PANTHER EXPANSIN-B1-LIKE PROTEIN 92 275 - -
Aip01g01329 276 Pfam Expansin C-terminal domain 177 260 IPR007117 -
Aip01g01329 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 189 271 IPR007117 -
Aip01g01329 276 SUPERFAMILY Barwin-like endoglucanases 92 174 IPR036908 -
Aip01g01329 276 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Aip01g01329 276 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Aip01g01329 276 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Aip01g01329 276 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01329 Aip-Chr1 39480822 39487296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01329 93 276 Expansin Gene Family AT4G17030 62.500 1.00e-88 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01329 - - aip:107617746 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00436 05 4927351 4929105 Aip01g01329 01 39480822 39487296 PCT