Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01327 ATGGCGAGAGTTGTGAGGGACAAGCGATCAGGGAAGACCAAAGGGTACGGATTCGTAAGCTTTGCGGACCCTTCGGACCTTGCCGTGGCTCTGAAGGAGATGAACGGGAAGTACGTTGGGAACAGGCCAATCAAGCTATGCAAGAGCAAGTGGAAGGAGAGGACCGATTATGATGCTGTTGATAAGCAGAAGAAGCACTCCAAGAAGAAGTTGAAGTCTTCCTCCAAGGTTGGAGATCCTCGGAATTGGAGTAAGTGTATTTGGGGAGTCGCCGAGGATGAGGACGATGCAGTTGTGGAGAATGAGAGCAAGGTAAAAGGAAGGGTGGGGTTGGGGGAGAAGCAAAAAGGGGACTTTGCCTTGGAGAGGTTCCAAAAGAGTCATGTGGCGAGATAG 396 0.5101 MARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDAVDKQKKHSKKKLKSSSKVGDPRNWSKCIWGVAEDEDDAVVENESKVKGRVGLGEKQKGDFALERFQKSHVAR 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01327 131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 51 IPR000504 GO:0003723
Aip01g01327 131 MobiDBLite consensus disorder prediction 57 80 - -
Aip01g01327 131 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 45 IPR000504 GO:0003723
Aip01g01327 131 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 76 - -
Aip01g01327 131 PANTHER RNA-BINDING PROTEIN 42-LIKE 1 76 - -
Aip01g01327 131 Gene3D - 1 79 IPR012677 -
Aip01g01327 131 SUPERFAMILY RNA-binding domain, RBD 2 55 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01327 Aip-Chr1 39394158 39396706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01327 11 53 Eukaryotic Initiation Factors Gene Family AT1G71770 39.535 2.15e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01327 K25079 - adu:107484659 143.665