Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g01290 ATGGCTGAATCGTATGATTTTGTTGAAGATGTTAATGCAAAGAAACTTGCATGGAGTTTTAAAGTTCATGTTATTAGGATTTATGAGGGTGGTAGGATTCAAGCTTCCATTCCAAAATCCTTGGTGAAGAAGTGGAGGGGAGTGATTATTGAGTTCCAGATGTACACTATGAGCAACTTTATTGTAATTAAAGAAATCAATCCTATGAAGAGAGTCATACCAGGGACATGGGTCTTTACTTTCTCACATAGGACTAGGGTTGATCATGTTGTGAATACAAGTTTTCCACTTCAGCCCTTTCGCTTTAGGACAATTCCACATCTCATCAATGCTGGAAGCTTGGTCGATAATGATCTTTTTGATCTTATTGGCGAGATTGTTGGGAAGGAAGAGCCAAAATATTTAATCACTAATAAAGGAAAAGAGACAAGACGCTTGGCGGTTGTGTTGCAAGATCTCGAGAACAATAGGATTAACTGTGTGCTATTTGGTGGTATGGTGGACCAAATACTACCACATTTTGAGGAAGGAAGGATGGAACCACTTATTGTCGTGCTGCAGTATTTCAGAGCAACTAGGTGGAAAGAAAAGACATCTGTTCAAAGTCACTTCGATGTTTCCAAACTACACATAGATGACCAGCTAGCAGATGTTGTGGGGGTTCCGAAACAGGTTGATAAACTGAAAAGAGGAGATGTTGTGGTGAAATCTATAGAGGATGTCTTACTCTCCATGGAGGAAGGTCCAACTTGGATTGTAGGGAGCATTGTTTCTATAAACGCTGGAAATAGTGATTGGTTTTATAAAGCATATAGAAAGTGTCCAAAGAAGGTTGAAACTCCAATTGGAAATCGATATAAATGCAGCAAATGTAGCCACACCCATAGAACTACAGCAATCAGGTTTAAGGTGGAAGTGATGGTATATGATGGGACTGGGAGTATGACGTTGCTGCTGTGGGATAGAGAAATAACCCAGCTTTGTGGGAAGGCAGCTGACAATATTATGGAAAAGGAGGAGTCTGGAGGGGATGAGTATCTAGCAACTTTTGATGCTATGATGGATAGGAAATTACTATTCAAGATCAATGTCAAAACTTCCAATATAAAACAGTATGACCAAGAAAACGGGTGTAGTAACTCAATTGATACTTCAGCAAATGTGGTCAACCTTAACACTGATACTGATCCTCAGTTGTCTATGGATTTGGTGGAAGAGTATGTTGATAGTATCAAGTCCAAAACTCTAGCTAAAAGAACTCCCGGGTGTCTAAAGTCTGCCCCACTGATACTGAACGACATTGATGAGGAAGGACAATTCTCTAACAATAAAGTTAGCAAAAAGGGGGACAAGAGGTAG 1359 0.3981 MAESYDFVEDVNAKKLAWSFKVHVIRIYEGGRIQASIPKSLVKKWRGVIIEFQMYTMSNFIVIKEINPMKRVIPGTWVFTFSHRTRVDHVVNTSFPLQPFRFRTIPHLINAGSLVDNDLFDLIGEIVGKEEPKYLITNKGKETRRLAVVLQDLENNRINCVLFGGMVDQILPHFEEGRMEPLIVVLQYFRATRWKEKTSVQSHFDVSKLHIDDQLADVVGVPKQVDKLKRGDVVVKSIEDVLLSMEEGPTWIVGSIVSINAGNSDWFYKAYRKCPKKVETPIGNRYKCSKCSHTHRTTAIRFKVEVMVYDGTGSMTLLLWDREITQLCGKAADNIMEKEESGGDEYLATFDAMMDRKLLFKINVKTSNIKQYDQENGCSNSIDTSANVVNLNTDTDPQLSMDLVEEYVDSIKSKTLAKRTPGCLKSAPLILNDIDEEGQFSNNKVSKKGDKR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g01290 452 CDD RPA1_DBD_B_like 121 218 - -
Aip01g01290 452 Gene3D - 230 390 IPR012340 -
Aip01g01290 452 Gene3D - 94 229 IPR012340 -
Aip01g01290 452 CDD RPA1_DBD_C 235 370 IPR013955 -
Aip01g01290 452 SUPERFAMILY Nucleic acid-binding proteins 113 221 IPR012340 -
Aip01g01290 452 SUPERFAMILY Nucleic acid-binding proteins 244 371 IPR012340 -
Aip01g01290 452 Pfam Replication factor-A C terminal domain 264 371 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g01290 Aip-Chr1 36976723 36979392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g01290 267 375 Core DNA Replication Machinery Family AT5G08020 26.126 8.12e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g01290 - - aip:107605622 847.425